Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N14
         (439 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0487 + 16471538-16471540,16471694-16471795,16471880-164719...   121   2e-28
02_03_0220 + 16545571-16545573,16545717-16545818,16545980-165460...    52   2e-07
04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590     50   8e-07
03_02_0238 - 6687334-6687421,6687456-6687512,6688266-6688351,668...    27   6.6  
08_01_0392 - 3454224-3454325,3454926-3455035,3455496-3455609,345...    27   8.7  

>04_03_0487 +
           16471538-16471540,16471694-16471795,16471880-16471908,
           16472619-16472745
          Length = 86

 Score =  121 bits (292), Expect = 2e-28
 Identities = 52/72 (72%), Positives = 58/72 (80%)
 Frame = +1

Query: 79  PLRSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGGR 258
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ITTVFSH+Q VVVC GC T+LCQPTGG+
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGK 72

Query: 259 ARLTEGCSFXXK 294
           ARLTEGCSF  K
Sbjct: 73  ARLTEGCSFRRK 84


>02_03_0220 +
           16545571-16545573,16545717-16545818,16545980-16546008,
           16549421-16553036
          Length = 1249

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +1

Query: 79  PLRSERRKHKLKRLVPHPNSYFMDVKCPGCYKITTVFSHA 198
           P   E+ KHK KRLV  PNS+FMDVKC GC+ ++  F  A
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNMSVRFDIA 52


>04_03_0796 + 19721379-19721381,19721479-19721580,19722558-19722590
          Length = 45

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 20/33 (60%), Positives = 24/33 (72%)
 Frame = +1

Query: 79  PLRSERRKHKLKRLVPHPNSYFMDVKCPGCYKI 177
           P   E+ KHK KRLV  PNS+FMDVKC GC+ +
Sbjct: 13  PAELEKLKHKKKRLVQSPNSFFMDVKCQGCFSM 45


>03_02_0238 -
           6687334-6687421,6687456-6687512,6688266-6688351,
           6688410-6688589
          Length = 136

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 166 CYKITTVFSHAQRVVVCAGCSTILCQPTGGR 258
           CYKI+ ++SH Q ++    C  IL +PTG R
Sbjct: 96  CYKISKIYSHGQSLL----CLDIL-RPTGRR 121


>08_01_0392 -
           3454224-3454325,3454926-3455035,3455496-3455609,
           3455930-3456043,3456474-3456531
          Length = 165

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 130 PNSYFMDVKCPGCYKITTVFSHAQRVVVCAGCSTILCQPTGG 255
           PN     + C GC  +  ++      V CA CST+   P  G
Sbjct: 18  PNGAQSQLVCSGCRNLL-MYPAGATSVCCAVCSTVTAVPAPG 58



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 196 AQRVVVCAGCSTILCQPTGGRARLTEGCS 282
           AQ  +VC+GC  +L  P G  +     CS
Sbjct: 21  AQSQLVCSGCRNLLMYPAGATSVCCAVCS 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,103
Number of Sequences: 37544
Number of extensions: 210595
Number of successful extensions: 449
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)