Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N12
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   186   2e-48
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   186   2e-48
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    45   9e-06
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.4  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   6.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   6.0  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  186 bits (453), Expect = 2e-48
 Identities = 86/113 (76%), Positives = 99/113 (87%)
 Frame = +2

Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
           K  +GT +K++PFGG+SHAKGIV+EK+GV AKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88

Query: 308 GCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 466
           GCLN ++ NDE L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+P
Sbjct: 89  GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
           MGKP G+  ARK  NHRRE+RWAD  + +   G   +  PF      KG
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKG 49


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  186 bits (453), Expect = 2e-48
 Identities = 86/113 (76%), Positives = 99/113 (87%)
 Frame = +2

Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
           K  +GT +K++PFGG+SHAKGIV+EK+GV AKQPNSAIRKCVRVQLIKNGKKVTAFVP D
Sbjct: 29  KRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHD 88

Query: 308 GCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 466
           GCLN ++ NDE L++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+P
Sbjct: 89  GCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 22/49 (44%), Positives = 27/49 (55%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
           MGKP G+  ARK  NHRRE+RWAD  + +   G   +  PF      KG
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKG 49


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 44.8 bits (101), Expect = 9e-06
 Identities = 32/100 (32%), Positives = 52/100 (52%)
 Frame = +2

Query: 116 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAF 295
           +N  K    T  ++    G+   +G+      V  K+PNSA+RK  RV+L   G+ VTA+
Sbjct: 29  RNKEKRPEKTNKQSVALEGSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAY 87

Query: 296 VPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVK 415
           +P  G  ++ + +   L+ G GR      D PGV++ VV+
Sbjct: 88  IP--GIGHNAQEHAVVLLRG-GR----AQDCPGVQYHVVR 120


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 351 ATSXSSFXSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 235
           ++S S F S+WFRQ +       AVT+F   MS    HL  A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
 Frame = +1

Query: 22  IGVSAIQMGKPRGIRTARKHVNHRREQRWADKEFNE--SPHG----YEMEG*PFRWC--- 174
           IG +  + G PR I+     ++ ++ +R  +   +E  SP+     + ME  PFRWC   
Sbjct: 755 IGTTVGEEGLPRKIKLTIDVISGQQLRRARELSNSETLSPYVEIQVHSMEESPFRWCSKV 814

Query: 175 ISRKGHRP 198
           +   G RP
Sbjct: 815 VHENGFRP 822


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 112 PPIAVHDGGSRAYAP 68
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,870
Number of Sequences: 5004
Number of extensions: 47839
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)