Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N12
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 198 2e-51
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 198 2e-51
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 114 5e-26
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 49 2e-06
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 29 2.6
04_04_0332 + 24477289-24477339,24477602-24477877,24478565-244787... 28 6.1
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 8.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 198 bits (484), Expect = 2e-51
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = +2
Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
K+H+G +WK PF G+SHAKGIVLEK+G+ AKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 87
Query: 308 GCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 472
GCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 88 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +1
Query: 43 MGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
MGK RG+ RK HRR QRWADK + +S G E + PF KG
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKG 48
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 198 bits (484), Expect = 2e-51
Identities = 90/115 (78%), Positives = 102/115 (88%)
Frame = +2
Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
K+H+G +WK PF G+SHAKGIVLEK+G+ AKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 199 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 257
Query: 308 GCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 472
GCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P S
Sbjct: 258 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 197 bits (481), Expect = 4e-51
Identities = 89/113 (78%), Positives = 101/113 (89%)
Frame = +2
Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
K+H+G +WK PF G+SHAKGIVLEK+G+ AKQPNSAIRKC RVQL+KNGKK+ AFVP D
Sbjct: 29 KSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKIAAFVPND 87
Query: 308 GCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 466
GCLN IE NDE L+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 88 GCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +1
Query: 34 AIQMGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
++ MGK RG+ RK HRR QRWADK + +S G E + PF KG
Sbjct: 168 SVNMGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKG 218
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/49 (46%), Positives = 27/49 (55%)
Frame = +1
Query: 43 MGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
MGK RG+ RK HRR QRWADK + +S G E + PF KG
Sbjct: 1 MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKK-PFAGSSHAKG 48
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 114 bits (274), Expect = 5e-26
Identities = 51/76 (67%), Positives = 60/76 (78%)
Frame = +2
Query: 128 KAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRD 307
K+H G +WK PF G+SHAKGIVLEK+G+ AKQPNSAI KC RVQL+KNGKK+ AFVP D
Sbjct: 100 KSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKKIAAFVPND 158
Query: 308 GCLNHIEXNDEXLVAG 355
GCLN I+ N+ V G
Sbjct: 159 GCLNFIKENEVAYVDG 174
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +1
Query: 49 KPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
K G+ RK HRR QRWADK + +S G E + PF KG
Sbjct: 74 KTCGMGAGRKLKTHRRNQRWADKAYKKSHFGNEWKK-PFAGSSHAKG 119
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = +2
Query: 335 DEXLVAGFGRKGHAVGDIPGVRFKVVK 415
DE L++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 138 MWAFVEFFVRPSLFTTVVHVLTRRSYSSGFTHLDSTDTNRLRMG 7
+W FV + S ++ +LT + ++G T LDS ++ L +G
Sbjct: 655 IWLFVVLIINSSYTASLTSILTVQQLATGITGLDSLLSSALPIG 698
>04_04_0332 +
24477289-24477339,24477602-24477877,24478565-24478702,
24478799-24480343
Length = 669
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 162 GLAFHFVPMWAFVEFFVRPSLFTTVVHVLTRRSYSSGFTHL 40
GLA + +W VE++ ++ +L + YSSG THL
Sbjct: 184 GLADPYDAVWCAVEYYESTG---AILRMLLQNGYSSGATHL 221
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 146 KWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKC 250
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,366,718
Number of Sequences: 37544
Number of extensions: 353730
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -