Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N12
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   214   4e-56
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    46   2e-05
U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    29   3.1  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   9.5  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  214 bits (522), Expect = 4e-56
 Identities = 97/119 (81%), Positives = 107/119 (89%)
 Frame = +2

Query: 116 KNSTKAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAF 295
           K   KAH+GT+WK+NPFGGASHAKGIVLEK+GV AKQPNSAIRKCVRVQLIKNGKK+TAF
Sbjct: 25  KRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAF 84

Query: 296 VPRDGCLNHIEXNDEXLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPXS 472
           VP DGCLN +E NDE LV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+K KKERP S
Sbjct: 85  VPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +1

Query: 43  MGKPRGIRTARKHVNHRREQRWADKEFNESPHGYEMEG*PFRWCISRKG 189
           MGKP+G+ TARK   HR+EQRW DK + ++  G   +  PF      KG
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKG 49


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 28/66 (42%), Positives = 41/66 (62%)
 Frame = +2

Query: 170 GASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEXNDEXLV 349
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++ + + LV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 350 AGFGRK 367
            G GR+
Sbjct: 129 KG-GRR 133


>U41011-4|AAA82287.1|  294|Caenorhabditis elegans Hypothetical
           protein D2024.4 protein.
          Length = 294

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 126 VEFFVRPSLFTTVVHVLTRRSYSSG 52
           V+  VRP + TTV+HV+ R    SG
Sbjct: 185 VKMDVRPGIMTTVIHVMDRNPMKSG 209


>Z81054-7|CAB02881.1|  472|Caenorhabditis elegans Hypothetical
           protein F01D4.4 protein.
          Length = 472

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 102 AMGGQRIQRKPTWVRNGRLTLSVVH 176
           AM G+ I+R   W+RNG  T+ V H
Sbjct: 370 AMTGEPIKRAVVWIRNGTETVPVKH 394


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 SDGRTKNSTKAHMGTKWKANP 163
           +D     STKA  G KWK NP
Sbjct: 850 TDSEASTSTKAKKGKKWKPNP 870


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 SDGRTKNSTKAHMGTKWKANP 163
           +D     STKA  G KWK NP
Sbjct: 850 TDSEASTSTKAKKGKKWKPNP 870


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 408 TLKRTPGMSPTA*PLRPNPATSXSS 334
           T  RTP  +P A P RP P+ S ++
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSSAA 62


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 408 TLKRTPGMSPTA*PLRPNPATSXSS 334
           T  RTP  +P A P RP P+ S ++
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSSAA 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,934
Number of Sequences: 27780
Number of extensions: 281185
Number of successful extensions: 585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)