Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N10
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U48847-1|AAD00073.1|   89|Drosophila melanogaster 8kd dynein lig...   188   8e-48
AY069718-1|AAL39863.1|   89|Drosophila melanogaster LP02196p pro...   188   8e-48
AE014134-242|AAN10465.1|   89|Drosophila melanogaster CG5450-PB,...   188   8e-48
AE014134-241|AAF51383.1|   89|Drosophila melanogaster CG5450-PA,...   188   8e-48
U48848-1|AAD00074.1|   89|Drosophila melanogaster 8kd dynein lig...   186   2e-47
U48846-1|AAD00072.1|   89|Drosophila melanogaster 8kd dynein lig...   186   2e-47
U32855-1|AAB04148.1|   89|Drosophila melanogaster cytoplasmic dy...   186   2e-47
AE014298-666|AAN09128.1|   89|Drosophila melanogaster CG6998-PD,...   186   2e-47
AE014298-665|AAN09127.1|   89|Drosophila melanogaster CG6998-PC,...   186   2e-47
AE014298-664|AAN09126.1|   89|Drosophila melanogaster CG6998-PB,...   186   2e-47
AE014298-663|AAF45975.1|   89|Drosophila melanogaster CG6998-PA,...   186   2e-47
AE013599-1402|AAF58574.1|  104|Drosophila melanogaster CG8407-PA...    70   2e-12

>U48847-1|AAD00073.1|   89|Drosophila melanogaster 8kd dynein light
           chain protein.
          Length = 89

 Score =  188 bits (457), Expect = 8e-48
 Identities = 86/89 (96%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AY069718-1|AAL39863.1|   89|Drosophila melanogaster LP02196p
           protein.
          Length = 89

 Score =  188 bits (457), Expect = 8e-48
 Identities = 86/89 (96%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014134-242|AAN10465.1|   89|Drosophila melanogaster CG5450-PB,
           isoform B protein.
          Length = 89

 Score =  188 bits (457), Expect = 8e-48
 Identities = 86/89 (96%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014134-241|AAF51383.1|   89|Drosophila melanogaster CG5450-PA,
           isoform A protein.
          Length = 89

 Score =  188 bits (457), Expect = 8e-48
 Identities = 86/89 (96%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAAFIKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>U48848-1|AAD00074.1|   89|Drosophila melanogaster 8kd dynein light
           chain protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>U48846-1|AAD00072.1|   89|Drosophila melanogaster 8kd dynein light
           chain protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>U32855-1|AAB04148.1|   89|Drosophila melanogaster cytoplasmic
           dynein light chain 1 protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014298-666|AAN09128.1|   89|Drosophila melanogaster CG6998-PD,
           isoform D protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014298-665|AAN09127.1|   89|Drosophila melanogaster CG6998-PC,
           isoform C protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014298-664|AAN09126.1|   89|Drosophila melanogaster CG6998-PB,
           isoform B protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE014298-663|AAF45975.1|   89|Drosophila melanogaster CG6998-PA,
           isoform A protein.
          Length = 89

 Score =  186 bits (454), Expect = 2e-47
 Identities = 85/89 (95%), Positives = 87/89 (97%)
 Frame = +1

Query: 106 MCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAFIKKEFDKKYNPTWHCIVGR 285
           M DRKAVIKNADMSEEMQQDAVDCATQAL K+NIEKDIAA+IKKEFDKKYNPTWHCIVGR
Sbjct: 1   MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60

Query: 286 NFGSYVTHETRHFIYFYLGQVAILLFKSG 372
           NFGSYVTHETRHFIYFYLGQVAILLFKSG
Sbjct: 61  NFGSYVTHETRHFIYFYLGQVAILLFKSG 89


>AE013599-1402|AAF58574.1|  104|Drosophila melanogaster CG8407-PA
           protein.
          Length = 104

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 34/95 (35%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +1

Query: 88  KQTQDKMCDRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAA-FIKKEFDKKYNPT 264
           K+ + K+     ++K+ DM+EEM+ +A++ +  A  K++   + AA  IK+  DKK+   
Sbjct: 8   KEGEKKIVHVYPLVKHTDMNEEMRIEAIELSITACEKYSSNYEHAAKIIKENMDKKFGIY 67

Query: 265 WHCIVGRNFGSYVTHETRHFIY-FYLGQVAILLFK 366
           WH +VG  FG  V++ET + +Y F+ G +AI+L+K
Sbjct: 68  WHVVVGEGFGFEVSYETENILYLFFAGNLAIVLWK 102


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,193,711
Number of Sequences: 53049
Number of extensions: 537982
Number of successful extensions: 1185
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)