Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N10
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.4  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   4.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.0  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 70   VHLSKQKQTQDKMC-DRKAVIKNADMSEEMQQDAVDCATQALXKFNIEKDIAAF-IKKEF 243
            +H ++ K+T DK+C   + V+  A         AV+  ++      +EK+ AA  +KK  
Sbjct: 1689 IHRTQVKETDDKICFTMRPVVSCASGC-----TAVETKSKPYKFHCMEKNEAAMKLKKRI 1743

Query: 244  DKKYNP 261
            +K  NP
Sbjct: 1744 EKGANP 1749


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 567 TVFTYTVYLIRNSQCWTLTASYLF 638
           T F   VY  RNS+ W +T +  +
Sbjct: 204 TGFALLVYDFRNSRSWRITNNLFY 227


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +3

Query: 441 CRFSCEARAVVHSHR*LAARVWQEEAXXC 527
           C +SC  +++++SH    + V+Q     C
Sbjct: 22  CSYSCVNKSMLNSHLKSHSNVYQYRCANC 50


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -3

Query: 192 ERLSCTVNSILLHLFAH 142
           ER+ C+ NS++ H++ +
Sbjct: 42  ERVYCSRNSLMTHIYTY 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,179
Number of Sequences: 438
Number of extensions: 3155
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)