Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N08
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0133 - 1057679-1057880,1058112-1058377 30 1.2
05_05_0263 - 23673014-23673697,23673772-23674188 29 2.1
04_03_0979 + 21389457-21389469,21390053-21390139,21390253-213903... 29 2.1
12_01_0862 + 8161117-8163913,8164000-8164019 27 6.5
10_08_0508 - 18416688-18416795,18417058-18417477 27 6.5
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 27 6.5
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 27 8.7
04_01_0106 + 1102880-1105691,1105781-1105806 27 8.7
03_01_0593 + 4379263-4379377,4380359-4380491,4380585-4380656,438... 27 8.7
01_06_0318 - 28434817-28435197,28435333-28435461 27 8.7
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -2
Query: 474 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 385
CT+ RL WPCR QP +GL P R L+
Sbjct: 64 CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93
>05_05_0263 - 23673014-23673697,23673772-23674188
Length = 366
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 132 PGPGADRNTDSIDERPAHQDNWPFCWKELD 43
PG A + + + E P + D P+ WKEL+
Sbjct: 240 PGTWAFKVFEMVHETPINNDGAPYAWKELE 269
>04_03_0979 +
21389457-21389469,21390053-21390139,21390253-21390359,
21390652-21390768,21391154-21391199,21392518-21392591,
21392785-21392838,21392926-21393030,21393126-21393184,
21393273-21393483,21393640-21393699
Length = 310
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -1
Query: 418 RAQPTTPFHSPVGAWNSAKV*Q---NEALYRVFFXSRVNLRQSPFSFSRRALMCR 263
R QP TPF S + A + Q +E L+ +F R SP+S R A +CR
Sbjct: 39 RVQPVTPFSSLSSRPDLALIHQCLPDELLFEIF------ARMSPYSLGRAACVCR 87
>12_01_0862 + 8161117-8163913,8164000-8164019
Length = 938
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 249 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 133
NR+ +G S ++ LG K P H ++ L S+FP D
Sbjct: 407 NRLDNQGLSMVTRLLGLSYKHLPVHLKNCFLLCSIFPED 445
>10_08_0508 - 18416688-18416795,18417058-18417477
Length = 175
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 187 WFQRPAQLRRQA*LPPACHPVP*GHP 264
W + A+ R + LP CHPVP G P
Sbjct: 92 WIETAARQRGKLRLPKQCHPVP-GSP 116
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 248 TGWQAGGSQACLRSWAG 198
TGW AGG C +W G
Sbjct: 44 TGWSAGGGDPCGAAWMG 60
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 27.1 bits (57), Expect = 8.7
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Frame = -2
Query: 462 LSWPCRSKQPKMRGLEPNQRLPSTLRWGPGTQRRSDRMKLCTEFSFXRGSIC-------- 307
+S PC + K+ L + ST G G+ RR+DR+ E S + + C
Sbjct: 95 VSVPCGASPRKIAALRKSSSSLSTTSSGGGSGRRTDRVS-AEESSACKTAACRRSSSTTP 153
Query: 306 ANHPFLFHGEP*CAGVSSRNRMAGRGKSGL 217
A+ P L G + A RG+ G+
Sbjct: 154 ASSPMLAADVDRSGGGGKAKKAAARGRRGV 183
>04_01_0106 + 1102880-1105691,1105781-1105806
Length = 945
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 249 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 133
NR+ +G + ++ LG + P H ++ L SS+FP D
Sbjct: 407 NRLDNQGLNMVTRLLGLSYRHLPAHLKNCFLLSSIFPED 445
>03_01_0593 +
4379263-4379377,4380359-4380491,4380585-4380656,
4380739-4380813,4380896-4380967,4381055-4381126,
4381251-4381322,4381403-4381468,4381547-4381612,
4381689-4381978,4382072-4382355,4382690-4382961,
4383411-4383546,4383840-4383970,4384078-4384234,
4384334-4384477
Length = 718
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 245 GWQAGGSQACLRSWAG 198
GWQA G C +SW G
Sbjct: 57 GWQASGGDPCGQSWQG 72
>01_06_0318 - 28434817-28435197,28435333-28435461
Length = 169
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/44 (29%), Positives = 18/44 (40%)
Frame = -1
Query: 394 HSPVGAWNSAKV*QNEALYRVFFXSRVNLRQSPFSFSRRALMCR 263
H V W ++ + + YRV F R L+ P S CR
Sbjct: 38 HRTVAEWETSGEYSSRSAYRVLFFGRTRLQHKPIWQSLAPPRCR 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,720,098
Number of Sequences: 37544
Number of extensions: 360926
Number of successful extensions: 964
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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