Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N08
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    67   8e-12
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   5.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   5.9  
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 31/72 (43%), Positives = 43/72 (59%)
 Frame = +3

Query: 270 IKALREKEKGDWRKLTLEXKKTLYRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIY 449
           I  +R KE+ DW+ L+ E KK LYR SF QT +EF+APTG WK +    L +  L  +  
Sbjct: 66  IAPIRAKEQADWKNLSAEEKKLLYRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYA 125

Query: 450 MAMKVFVYSPIP 485
           + + V VY  +P
Sbjct: 126 VLLNVCVYPELP 137



 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +2

Query: 158 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFRED 259
           K   RE VGYG NG   Y DR D+  PAIRFR++
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKE 62


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 125 GPGSTGNTELAKIGDREWVGYGFNGQ 202
           G G TG  EL    D E V +GFNG+
Sbjct: 607 GQGGTGGHELTHGYDDEGVQFGFNGE 632


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 116  SAPGPGSTGNTELAKIGDREWVGYGFNGQPNYVDRPDFPL 235
            S P P S+ N E+    +    GYG   QP YVD  D  L
Sbjct: 1467 STPNPESSINCEVRV--ETSQAGYGGAQQPGYVDEDDTDL 1504


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 116  SAPGPGSTGNTELAKIGDREWVGYGFNGQPNYVDRPDFPL 235
            S P P S+ N E+    +    GYG   QP YVD  D  L
Sbjct: 1467 STPNPESSINCEVRV--ETSQAGYGGAQQPGYVDEDDTDL 1504


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 171 RSPILASSVFPVDPGPGADRNTDSIDERPAH 79
           + P+ A+ V PV+     +R  D +D +P H
Sbjct: 491 KQPVAATHVAPVEVSEFEERLDDDVDHKPRH 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,689,317
Number of Sequences: 27780
Number of extensions: 279913
Number of successful extensions: 809
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)