Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N06
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 312 4e-86
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 311 5e-86
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 311 5e-86
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 180 2e-46
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 174 8e-45
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 111 8e-26
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 58 8e-10
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 48 2e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 46 4e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 44 1e-05
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 44 1e-05
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 41 1e-04
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 35 0.001
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 32 0.062
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 30 0.25
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 30 0.33
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 29 0.44
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 1.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 312 bits (765), Expect = 4e-86
Identities = 149/173 (86%), Positives = 158/173 (91%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKE 586
GEFE GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RF EI KE
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 311 bits (764), Expect = 5e-86
Identities = 148/173 (85%), Positives = 158/173 (91%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKE 586
GEFE GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RF EI KE
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 311 bits (764), Expect = 5e-86
Identities = 148/173 (85%), Positives = 158/173 (91%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKE 586
GEFE GISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RF EI KE
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 180 bits (437), Expect = 2e-46
Identities = 81/165 (49%), Positives = 112/165 (67%)
Frame = +2
Query: 80 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLK 259
K H+NIV IGHVD+GKST G++++ G +DKRT+ K E+EA E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 260 AERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 439
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 440 XGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXE 574
G + GQTREHA+LA T G+ L+V +NKMD +SE R+ E
Sbjct: 356 AGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKE 400
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 174 bits (424), Expect = 8e-45
Identities = 86/170 (50%), Positives = 111/170 (65%)
Frame = +2
Query: 80 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLK 259
K +++VV GHVDSGKST G ++++ G I+ R++ K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 260 AERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 439
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 440 XGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKEV 589
G +NGQTREHA L LG+ +++V VNK+D +SE RF EIK V
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIV 342
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 111 bits (267), Expect = 8e-26
Identities = 66/162 (40%), Positives = 91/162 (56%)
Frame = +2
Query: 74 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
E+ RGITI A ++ET + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Query: 434 FEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSE 559
QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 154 MP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 58.4 bits (135), Expect = 8e-10
Identities = 46/148 (31%), Positives = 67/148 (45%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGIS 451
RGITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG------- 129
Query: 452 KNGQTREHALLAFTLGVKQLIVXVNKMD 535
QT+ A G+ + ++ VNKMD
Sbjct: 130 VEAQTKVVWKQATKRGIPK-VIFVNKMD 156
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 47.6 bits (108), Expect = 2e-06
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 4/152 (2%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
N VI H+D GKST + ++ G I++ + F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNF-----------RNQF-----LDKLEVERR 103
Query: 272 RGITIDIA----LWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 439
RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG--- 160
Query: 440 XGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
QT + +AF+ + +I +NK+D
Sbjct: 161 ----IQAQTLSNFYMAFSQNL-VIIPVLNKVD 187
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 46.4 bits (105), Expect = 4e-06
Identities = 45/147 (30%), Positives = 66/147 (44%), Gaps = 19/147 (12%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 272 RGITIDIA----LWK---------------FETXKYYVTIIDAPGHRDFIKNMITGTSQA 394
+GITI A W+ FE Y + IID PGH DF +
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFE-KSYNINIIDTPGHIDFTIEVERALRVL 169
Query: 395 DCAVLIVAAGTGEFEXGISKNGQTREH 475
D AVL++ A +G I+ + Q R +
Sbjct: 170 DGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 44.4 bits (100), Expect = 1e-05
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIXKF-EKEAXEMGKGSFKYA 238
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 239 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
+ L AE D+ + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAIS-LFAEMTDDDMKDMKE-PADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 44.4 bits (100), Expect = 1e-05
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIXKF-EKEAXEMGKGSFKYA 238
MGK N+ VI HVD GKST T L+ K G I K +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 239 WVLDKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
+ L AE D+ + + V +ID+PGH DF + D A+++V
Sbjct: 73 TAIS-LFAEMTDDDMKDMKE-PADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.1 bits (92), Expect = 1e-04
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +2
Query: 323 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGV 502
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 503 KQLIVXVNKMDSTEPPYSEPRFXEIKK 583
K +I+ NK+D +E + I K
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILK 189
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.7 bits (76), Expect(2) = 0.001
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 215 GKGSFKYAWVLDKLKAERERGITIDIALWK--FETXKYYVTIIDAPGHRDFIKNMITGTS 388
GK + A+ + + GIT I + F+ ++T +D PGH F G +
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 389 QADCAVLIVAAGTG 430
AD VL+VA G
Sbjct: 243 IADIVVLVVAGDDG 256
Score = 22.2 bits (45), Expect(2) = 0.001
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 95 IVVIGHVDSGKST 133
+ ++GHVD GK+T
Sbjct: 174 VTLMGHVDHGKTT 186
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 32.3 bits (70), Expect = 0.062
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIXKFEKEAXEMGKGSFKYAWVLDKLKA 262
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 263 ERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
I K Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 30.3 bits (65), Expect = 0.25
Identities = 25/105 (23%), Positives = 45/105 (42%)
Frame = +2
Query: 101 VIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERERGI 280
++GHVD+GK+ +L + + + ++ +G F + K K ++G
Sbjct: 489 ILGHVDTGKTKLLDNL--RRSNVQEGEAGGITQQ---IGATYFPIESIKQKTKVVNKKG- 542
Query: 281 TIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
K + + IID PGH F GTS + A+L++
Sbjct: 543 -------KLQYNIPGLLIIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 285 IVIPRSRSAFSLSNTQAYLKDPLPISWASFSNXSMVRLSIPPH 157
I IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 171 IPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 248 DKLKAER-ERGITIDIALWKFETXKYYV--TIIDAPGHRDFIKN 370
+K++A+ E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.8
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
+ +V GH+ GKS L+Y + + S +Y D ERE
Sbjct: 142 SFIVAGHLHHGKSALLDLLVYYT-----------HPDTKPPKRRSLRYT---DTHYLERE 187
Query: 272 RGITID-----IALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
R ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 188 RVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 309 SNFQRAISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNXSMV 178
S F IS+ +P FSL+ ++ K LPI W S + S V
Sbjct: 403 STFGVNISVGVPTGSITFSLNWSRLGQKISLPIMWCSVFDRSAV 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,139
Number of Sequences: 5004
Number of extensions: 42741
Number of successful extensions: 145
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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