Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N06
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 333 5e-92
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 333 5e-92
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 300 6e-82
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 240 2e-70
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 206 1e-53
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 206 1e-53
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 188 3e-48
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 7e-32
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 93 1e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 93 1e-19
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 91 8e-19
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 91 8e-19
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 91 8e-19
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 43 2e-05
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 42 4e-04
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.004
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 38 0.005
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 38 0.006
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 36 0.019
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.10
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.10
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 34 0.10
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.31
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 28 5.0
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 28 5.0
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 28 5.0
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 6.6
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 333 bits (819), Expect = 5e-92
Identities = 158/174 (90%), Positives = 161/174 (92%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKEV 589
GEFE GISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EV
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEV 174
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 333 bits (819), Expect = 5e-92
Identities = 158/174 (90%), Positives = 161/174 (92%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKEV 589
GEFE GISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EV
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEV 174
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 300 bits (736), Expect = 6e-82
Identities = 151/190 (79%), Positives = 158/190 (83%), Gaps = 1/190 (0%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 427
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 428 GEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKKEVFXLHQE 607
GEFE GISKNGQTREHALLA TLGVKQL V+ T P S R I++ +F L Q
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR-LFHLSQS 176
Query: 608 -DWLQPXCCR 634
D + C R
Sbjct: 177 PDSTETTCLR 186
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 240 bits (588), Expect(2) = 2e-70
Identities = 111/117 (94%), Positives = 113/117 (96%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 248 DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 418
DKLKAERERGITIDIALWKFET KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 43.2 bits (97), Expect(2) = 2e-70
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +2
Query: 509 LIVXVNKMDSTEPPYSEPRFXEIKKEV 589
L+V NKMDSTEPP+SE RF EI EV
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEV 140
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 206 bits (503), Expect = 1e-53
Identities = 101/184 (54%), Positives = 129/184 (70%), Gaps = 2/184 (1%)
Frame = +2
Query: 77 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 256
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 257 KAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 436
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 437 EXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKK--EVFXLHQED 610
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF EIK VF Q
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 344
Query: 611 WLQP 622
+ +P
Sbjct: 345 FSKP 348
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 206 bits (503), Expect = 1e-53
Identities = 101/184 (54%), Positives = 129/184 (70%), Gaps = 2/184 (1%)
Frame = +2
Query: 77 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKL 256
+K IN++V+GHVD+GKST GHL++ +D RTI KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 257 KAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 436
+ ERERG+T+DI FET + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 437 EXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIKK--EVFXLHQED 610
E G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF EIK VF Q
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAG 362
Query: 611 WLQP 622
+ +P
Sbjct: 363 FSKP 366
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 188 bits (458), Expect = 3e-48
Identities = 85/170 (50%), Positives = 117/170 (68%)
Frame = +2
Query: 71 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 250
G K HIN+V +GHVD+GKST G L++ G +DKRT+ K+E+EA E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 251 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 431 EFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTEPPYSEPRFXEIK 580
EFE G + GQTREH++L T GVK L++ VNKMD + E RF EI+
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIE 273
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (323), Expect = 7e-32
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVL 247
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KFEKEA EMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 248 DKLKAER 268
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 93.5 bits (222), Expect = 1e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 80 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 434 FEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 544
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 93.5 bits (222), Expect = 1e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 80 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 434 FEXGISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 544
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 90.6 bits (215), Expect = 8e-19
Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Frame = +2
Query: 74 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 89
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 434 FEXGISKNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPR 565
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 186
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 90.6 bits (215), Expect = 8e-19
Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Frame = +2
Query: 74 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 434 FEXGISKNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPR 565
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 187
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 90.6 bits (215), Expect = 8e-19
Identities = 66/166 (39%), Positives = 88/166 (53%), Gaps = 2/166 (1%)
Frame = +2
Query: 74 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDK 253
++K H+N+ IGHVD GK+T T I K A G KY + D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTS------------AITKIL--ATSKGAKYRKYEDI-DN 90
Query: 254 LKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 433
E+ RGITI+ ++ET K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 434 FEXGISKNGQTREHALLAFTLGV--KQLIVXVNKMDSTEPPYSEPR 565
QTREH LLA +GV ++V +NK+D E P +E R
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR 187
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 60.5 bits (140), Expect = 1e-09
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGIS 451
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 452 KNGQTREHALLAFTLGVKQLIVXVNKMD 535
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.4 bits (130), Expect = 2e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGIS 451
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 452 KNGQTREHALLAFTLGVKQLIVXVNKMD 535
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 42.7 bits (96), Expect(2) = 2e-05
Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Frame = +2
Query: 215 GKGSFKYAWVLDKLKAERERGITIDIALWKFETXK-YYVTIIDAPGHRDFIKNMITGTSQ 391
GK + A ++ A GIT I + E K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 392 ADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 2e-05
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2
Query: 95 IVVIGHVDSGKST 133
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 41.9 bits (94), Expect = 4e-04
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 220
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 221 GSFKYAWVLDKLKAERERG----ITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTS 388
+ + L+K E +G T+++ K + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 389 QADCAVLIVAAGTG 430
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 41.5 bits (93), Expect = 5e-04
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Frame = +2
Query: 68 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIXKF-------EKEAXEMGK 220
M +++ N+ VI HVD GKST T L+ K G I K +F ++ +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 221 GSFKYAWVLDKLKAERERG----ITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTS 388
+ + L+K E +G T+++ K + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 389 QADCAVLIVAAGTG 430
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 38.7 bits (86), Expect = 0.004
Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Frame = +2
Query: 89 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAER 268
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 269 ERGITIDIALWKFETXK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXG 445
R T+D+ + + +ID PGH I+ ++ ++ D A++I+ + G
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 446 ISKNGQTREHALLAFTLGVKQLIVXVNKMDSTE 544
I QT EH LLA ++I+ +NK D E
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE 139
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 250
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 251 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.3 bits (85), Expect = 0.005
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +2
Query: 74 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLD 250
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 251 KLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 415
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 37.9 bits (84), Expect = 0.006
Identities = 47/169 (27%), Positives = 69/169 (40%), Gaps = 11/169 (6%)
Frame = +2
Query: 62 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 232
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 233 YAWVL------DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTS-- 388
+L + + +D + K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTIFGMTGH 250
Query: 389 QADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 MPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 291
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +2
Query: 323 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGV 502
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 503 KQLIVXVNKMDSTEPPYSEPRFXEI 577
L++ NK+D + + + +I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.9 bits (74), Expect = 0.10
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +2
Query: 92 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 272 RGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 430
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 33.9 bits (74), Expect = 0.10
Identities = 46/170 (27%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Frame = +2
Query: 62 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIXKFEKEAXEMGKGSFK 232
P K+ + V+G+VD+GKST G L + G RT K E G+ S
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFESGRTSSV 191
Query: 233 YAWVL------DKLKAERERGITIDIALWKFETXKYYVTIIDAPGHRDFIKNMITGTSQ- 391
+L + + +D + K VT ID GH ++K I G +
Sbjct: 192 GNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTIFGMHRP 250
Query: 392 --ADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
+ +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 251 YARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 292
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.31
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +2
Query: 332 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEXGISKNGQTREHALLAFTLGVKQL 511
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 512 IVXVNKMDSTEPPYSEPR 565
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 31.9 bits (69), Expect = 0.41
Identities = 47/157 (29%), Positives = 66/157 (42%), Gaps = 8/157 (5%)
Frame = +2
Query: 89 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIXKFEKEAXEMGKGSFKYAWVLDKLKA 262
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 263 ERERGITIDIALWKF----ETXKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 424
RG ++ A E VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 425 TGEFEXGISKNGQTREHALLAFTLGVKQLIVXVNKMD 535
+ GI+ TREH L L + + V + KMD
Sbjct: 285 ----DRGIT--WATREHLGLIAALNI-PMFVLITKMD 314
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 89 INIVVIGHVDSGKSTTT 139
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 170 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
+KR + EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 170 DKRTIXKFEKEAXEMGKGSFKYAWVLDKLKAERE 271
+KR + EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.3 bits (60), Expect = 5.0
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -1
Query: 511 ELFDTEGESEQGMLTGLTVLRDTXFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 353
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 352 VSRSINDGNIVLXSFELPESNIDCDTTLTLSL*FVQYPSI 233
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 326 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 421
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,487
Number of Sequences: 27780
Number of extensions: 245299
Number of successful extensions: 667
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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