Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N05
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    54   1e-08
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    29   0.58 
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom...    29   0.77 
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   4.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   7.2  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    25   9.5  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.5  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   9.5  

>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/59 (40%), Positives = 39/59 (66%)
 Frame = +1

Query: 268 LDKDICLLVDEKDNFIGTATKRECHKVXPDGDVLLHRAFSVFLFNKRGDMFLQQEIKPK 444
           L +++C++VDE D  +   TK+ECH +      LLHRAFS+F+F+++  + LQQ  + K
Sbjct: 17  LMEEVCIVVDENDVPLRYGTKKECHLMENINKGLLHRAFSMFIFDEQNRLLLQQRAEEK 75


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +1

Query: 283 CLLVDEKDNFIGTATKRECHKVXPDGDVLLH 375
           C++VDE DN I +A  R      PDGDV  H
Sbjct: 34  CIIVDENDNVIMSAGNR-----VPDGDVTQH 59


>SPAC6F12.13c |fps1||geranyltranstransferase
           Fps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = -3

Query: 528 VEISSYKI**HSYLLSLVKXYIIXQQFTFWLDLLLKEHITSLVEEENTECSME*HITIRS 349
           V++S + +  HS+++     +     ++F+L + L  H+  +   EN +C+ +  I +  
Sbjct: 175 VDLSKFSLQKHSFIVIYKTAF-----YSFYLPVALAMHLAGVATPENLKCAQDILIILGK 229

Query: 348 YF 343
           YF
Sbjct: 230 YF 231


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -1

Query: 371 SSTSPSGXTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPS 237
           SS+S S  +   S   +VP+  S SS+    S S +S+ ++SRPS
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPS 235


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -3

Query: 480  LVKXYIIXQQFTFWLDLLLKEHITSLVEEENTECSME*HITIRSYFMTFSLCSRSYEVVL 301
            L+K Y++ QQ  + ++LL    IT+  E    + S+E ++ I+S   +     ++Y   L
Sbjct: 845  LIKEYLVLQQLKYSINLL----ITAARENLTIKNSLEAYVVIKSKSQSLLSFLKNYSSDL 900

Query: 300  -FIN*QANIFI 271
             F+   + +FI
Sbjct: 901  PFLFNTSKVFI 911


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 215 TGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFT 117
           T  EA +L S+L   H+D +  L+N+    +FT
Sbjct: 78  TSMEALDLSSSLTTPHADKLLKLSNLIAAKSFT 110


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 218 FTGSEAKNLFSTLRVLHSDLVSFLTNIFVCMNFTE 114
           F+ S      S +R+LH++    L  +  C+N TE
Sbjct: 219 FSYSHHMGYISEIRILHNEYEKLLKFVRECLNSTE 253


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 223 QVSQVLKPK-IFSRLLGCSTVILLAF*PTFSYV-*ILLNYTFTLQYNINNNVSR 68
           Q +Q + PK IF +LL    VIL AF   FS+     +N  ++ Q N    V R
Sbjct: 254 QQAQDMPPKSIFYQLLPLIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPR 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,874
Number of Sequences: 5004
Number of extensions: 45708
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)