Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N05
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0796 + 21572131-21572204,21573427-21573482,21573580-215736...    61   9e-10
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    59   3e-09
10_08_0513 + 18460095-18460170,18460362-18460441,18461029-184614...    29   3.2  
07_03_0814 + 21700274-21701923,21702282-21702434,21702563-217026...    29   4.2  
07_03_1548 + 27630988-27631049,27631632-27631767,27631904-276320...    28   7.4  
05_04_0073 + 17669311-17671635                                         28   7.4  

>07_03_0796 +
           21572131-21572204,21573427-21573482,21573580-21573671,
           21574103-21574205,21574297-21574434,21574654-21574907
          Length = 238

 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
 Frame = +1

Query: 223 ATLXKDGLELAXAEALDKDICLLVDEKDNFIGTATKRECHKVXP-DGDVLLHRAFSVFLF 399
           A +   G++      +  D C+LVDE+DN +G  +K  CH +   + + LLHRAFSVFLF
Sbjct: 6   AAVEDAGMDEVQKRLMFDDECILVDEQDNVVGHESKYNCHLMEKIESENLLHRAFSVFLF 65

Query: 400 NKRGDMFLQQEIKPK 444
           N + ++ LQQ    K
Sbjct: 66  NSKYELLLQQRSATK 80


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
 Frame = +1

Query: 241 GLELAXAEALDKDICLLVDEKDNFIGTATKRECHKVXP-DGDVLLHRAFSVFLFNKRGDM 417
           G++      + +D C+LVDE+DN IG  +K  CH +   +   +LHRAFSVFLFN + ++
Sbjct: 68  GMDAVQQRLMFEDECILVDEQDNVIGHDSKYNCHLMEKINSGHVLHRAFSVFLFNSKYEL 127

Query: 418 FLQQEIKPK 444
            LQQ    K
Sbjct: 128 LLQQRSATK 136


>10_08_0513 +
           18460095-18460170,18460362-18460441,18461029-18461491,
           18461914-18462073,18462177-18462451,18462634-18462801,
           18463012-18463064
          Length = 424

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 401 TREVICSFSRRSSQKV-NCCXIMXNFTND 484
           T  VIC++S+  +QKV +CC  + +F ND
Sbjct: 208 TWNVICTYSQFLAQKVPSCCVSLSSFDND 236


>07_03_0814 +
           21700274-21701923,21702282-21702434,21702563-21702634,
           21702923-21703033
          Length = 661

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -1

Query: 386 LNALWSSTSPSGXTL*HSLFVAVPMKLSFSSTSRQISLSKASAWANSRPSL 234
           L++L  S S SG  L HSL ++ P  LS   +   ++   A++ A SRP++
Sbjct: 116 LSSLLHSLSVSGRLLPHSLLLSFPPSLSDPPSPLLLNSLLAASAAASRPAV 166


>07_03_1548 +
           27630988-27631049,27631632-27631767,27631904-27632041,
           27632168-27632267,27632443-27632552
          Length = 181

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 295 DEKDNFIGTATKRECHKVXPDGDVLLHRA 381
           D  D  I TAT   CH+  P  ++ LH A
Sbjct: 7   DSADPVITTATCAHCHREIPSPNIALHSA 35


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 48  LLTERRSRDTLLFILYCNVKV*FSKIHTYENVGQKANKITVEHPKSREKI 197
           LL+ R  R T LF+ +C V      +  +  V   A   T+ HP+ R K+
Sbjct: 706 LLSWRDPRATALFVTFCFVAAIVLYVTPFRVVVFLAGLYTLRHPRFRHKM 755


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,002
Number of Sequences: 37544
Number of extensions: 239109
Number of successful extensions: 427
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)