Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N05
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl dip...    44   9e-05
AY597336-1|AAT08468.1|  236|Caenorhabditis elegans isopentenyl-d...    44   9e-05
Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical p...    29   2.9  
U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL033510-9|CAL49451.1|  291|Caenorhabditis elegans Hypothetical ...    27   8.7  
AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical ...    27   8.7  

>L15314-5|AAK18968.1|  236|Caenorhabditis elegans Isopentenyl
           diphosphate isomeraseprotein 1 protein.
          Length = 236

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 274 KDICLLVDEKDNFIGTATKRECHKVXPDGDVLLHRAFSVFLFNKRGDMFLQQEIKPK 444
           ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+    K
Sbjct: 32  REQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEK 85


>AY597336-1|AAT08468.1|  236|Caenorhabditis elegans
           isopentenyl-diphosphate isomerase protein.
          Length = 236

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = +1

Query: 274 KDICLLVDEKDNFIGTATKRECHKVXPDGDVLLHRAFSVFLFNKRGDMFLQQEIKPK 444
           ++ C+ VDE D  IG  +KRE H       ++LHRAFSVF F     + +Q+    K
Sbjct: 32  REQCINVDENDRIIGGVSKREAHS---SYQLVLHRAFSVFSFTSDNKLLMQKRSAEK 85


>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 453 QFTFWLDLLLKEHITSLVEEENTECS 376
           +F FWLDL++ +HI  L   E  E +
Sbjct: 253 EFEFWLDLMIAQHIVLLSRTEEYEAT 278


>Z81132-11|CAB03426.2|  302|Caenorhabditis elegans Hypothetical
           protein T26E4.15 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 227 VAGFTGSEAKNLFSTLRVLHSDLVSFLTNIFVCM 126
           + GFTG    NLF  L  LHS+ +  + NI +C+
Sbjct: 17  IVGFTG----NLFMVLVTLHSNKLRSICNILICV 46


>U23511-6|ABD63239.1|  116|Caenorhabditis elegans Hypothetical
           protein C32D5.14 protein.
          Length = 116

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 179 RVLHSDL--VSFLTNIFVCMNFTELHFYI 99
           R+  SD+  + F T I +C+NF + HF I
Sbjct: 68  RIRRSDINSIKFQTKILICLNFRKGHFLI 96


>AL033510-9|CAL49451.1|  291|Caenorhabditis elegans Hypothetical
           protein Y40H7A.4b protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -1

Query: 296 STSRQISLSKASAWANSRPSLXRVAGFTGSEAKNLFSTLRV-----LHSDLVSFLTNIFV 132
           +T R  S  K+  +    P    +A    SE K     L++      H+ L  FL + FV
Sbjct: 162 NTLRIFSTLKSHVYVGMIPDNLTIAHIMHSEYKTEVEILKIDIEGGEHTGLEQFLRDFFV 221

Query: 131 CMNFTELH 108
           C    E+H
Sbjct: 222 CQILIEIH 229


>AL033510-8|CAA22061.1|  291|Caenorhabditis elegans Hypothetical
           protein Y40H7A.4a protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
 Frame = -1

Query: 296 STSRQISLSKASAWANSRPSLXRVAGFTGSEAKNLFSTLRV-----LHSDLVSFLTNIFV 132
           +T R  S  K+  +    P    +A    SE K     L++      H+ L  FL + FV
Sbjct: 162 NTLRIFSTLKSHVYVGMIPDNLTIAHIMHSEYKTEVEILKIDIEGGEHTGLEQFLRDFFV 221

Query: 131 CMNFTELH 108
           C    E+H
Sbjct: 222 CQILIEIH 229


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,261,165
Number of Sequences: 27780
Number of extensions: 246076
Number of successful extensions: 489
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)