Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N04
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   4.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.2  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 198 NMWSP*PFLLCLSMFTIKCTNHK 130
           ++W P P+ L   +  I   NHK
Sbjct: 70  SLWQPDPYFLNAKVSEIAALNHK 92


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 337 VLSNPDKRRIYD 372
           V  NPD +R+YD
Sbjct: 23  VAGNPDAKRLYD 34


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 337 VLSNPDKRRIYD 372
           V  NPD +R+YD
Sbjct: 23  VAGNPDAKRLYD 34


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 121  SNRLLFLNNYHYYT---VFSVKRKTARILCCTSRQRSLF 14
            S+ L++  N + YT   V SV++     L    RQRSLF
Sbjct: 1216 SSPLVYKRNINTYTLDGVGSVEKTGVSTLRGQERQRSLF 1254


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 323 LRPMRCSRILTKGEFMIXVVNK 388
           L  +R   +L KG F I ++NK
Sbjct: 468 LTALRKRDVLKKGNFTIEILNK 489


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 360 PFVRIREHLIGLRYL 316
           PFV I+E +  LRY+
Sbjct: 364 PFVSIQEQIPRLRYI 378


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 343 SNPDKRRIYD 372
           +NPD +R+YD
Sbjct: 30  ANPDTKRLYD 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,166
Number of Sequences: 438
Number of extensions: 2451
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)