Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N01
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 132 5e-32
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 131 8e-32
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 1.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 27 1.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 2.6
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 26 3.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 4.6
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 4.6
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 8.1
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 25 8.1
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 132 bits (318), Expect = 5e-32
Identities = 64/131 (48%), Positives = 92/131 (70%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRW 358
K A++ LKGR+ EVSLADLQ D E +FRK L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 359 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEII 538
+V+KWQT IEA+ + TTDGY+ RVF IGFT + + +KT YA +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 539 TRDVTNSELXE 571
++ + E
Sbjct: 173 QNQTSSCSMRE 183
Score = 38.3 bits (85), Expect = 8e-04
Identities = 12/20 (60%), Positives = 18/20 (90%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPLYVQ 131
+VDPF+RK+WYD+KAP + +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFE 39
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 207
+ F + VG TLVNRT +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 131 bits (316), Expect = 8e-32
Identities = 64/131 (48%), Positives = 89/131 (67%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRW 358
K A++ LKGR+ EVSLADLQ D E SFRK L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 359 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEII 538
+V+KWQ+ IEAN + TTDGY+ R+F IGFT++ +KT YA +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 539 TRDVTNSELXE 571
+ E
Sbjct: 173 QNQANGCSMKE 183
Score = 39.9 bits (89), Expect = 3e-04
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAPLYVQ 131
+VDPF+RKDWYD+KAP + +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFE 39
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGK 207
+ F + VG TLVNRT +N ++G+
Sbjct: 36 AFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 176 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 356 WMVKKWQTLIE-ANIDVXTTDGYVLRVFCIGFTNKDSLSQRK 478
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 27.9 bits (59), Expect = 1.1
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +2
Query: 209 VFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 382
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 383 IEANIDVXTT 412
+E + D+ TT
Sbjct: 144 LETSKDLETT 153
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -3
Query: 212 KLFPSILPKQFSLXWVRLTSVVPTCLLLNIERSLDI 105
K+ + K+ ++ W +L V C +N+E S+ I
Sbjct: 649 KVLDMVEVKKLNILWEKLLEYVSVCFFINVEESVRI 684
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 376 LPFFNHPPELIGCEVHAVEVAEHITS 299
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 26.2 bits (55), Expect = 3.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -2
Query: 270 LRKDLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPL 133
+ KD S + +A SA E +P +FV GTV +DLP+
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPI 376
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 353 RWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYA 490
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 436 LHWFHQ*GLLEPTQDVLRPXHSGQ--SNQKENV 528
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -1
Query: 355 PELIGCEVHAVEVAEHITSL 296
PELI C H EV E I SL
Sbjct: 216 PELINCIAHPEEVPETIHSL 235
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 179 KIASEGLKGRVFEVS----LADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDL 337
K+ S+ L G EV+ +DL+++ D + + I++ G + LCN D+
Sbjct: 216 KLHSQSLVGNNCEVNSEDEFSDLESEVDPDELEKAMCPISDMFNGDDELCNIRLYDI 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,124
Number of Sequences: 5004
Number of extensions: 44495
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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