Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N01
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 166 1e-41
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 164 5e-41
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 163 7e-41
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 32 0.29
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 30 1.5
07_03_0473 - 18525712-18525858,18526049-18526162,18526442-185265... 29 2.7
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 29 3.6
06_03_0290 - 19193707-19193752,19193822-19194090 28 4.7
04_01_0596 - 7852529-7855185,7855545-7855581 28 6.2
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 6.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 166 bits (403), Expect = 1e-41
Identities = 82/132 (62%), Positives = 101/132 (76%)
Frame = +2
Query: 176 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
TKIASEGLK RVFEVSLADLQ D D +++RK L AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 356 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEI 535
+VKKWQTLIEA++DV TTDGY+LR+FCIGFT + ++TCYA +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 536 ITRDVTNSELXE 571
+ ++ +L E
Sbjct: 172 MANQASSCDLKE 183
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAP 119
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 164 bits (398), Expect = 5e-41
Identities = 82/132 (62%), Positives = 99/132 (75%)
Frame = +2
Query: 176 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
TKIASEGLK RVFEVSLADLQ D D +++RK L AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 356 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEI 535
+VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYA +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 536 ITRDVTNSELXE 571
+ + +L E
Sbjct: 172 MANQASTCDLKE 183
Score = 36.3 bits (80), Expect = 0.018
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAP 119
VDPF++KDWYD+KAP
Sbjct: 21 VDPFSKKDWYDIKAP 35
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 163 bits (397), Expect = 7e-41
Identities = 81/132 (61%), Positives = 100/132 (75%)
Frame = +2
Query: 176 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
TKIASEGLK RVFEVSLADLQ D D +++RK L AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 356 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEI 535
+VKKWQTLIEA++DV TTD Y+LR+FCIGFT + ++TCYA +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 536 ITRDVTNSELXE 571
+ ++ +L E
Sbjct: 172 MVNQASSCDLKE 183
Score = 35.9 bits (79), Expect = 0.024
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 75 VDPFTRKDWYDVKAP 119
VDPF +KDWYD+KAP
Sbjct: 21 VDPFAKKDWYDIKAP 35
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 308 VLCNFHGMDLTTDKLRWM-VKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTC 484
++C+ L KL + + KW+ L+ I G+V+R+ C+ F ++ L ++K
Sbjct: 332 LVCSLSIRSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRI-CVFFVERNFLLRKKVL 390
Query: 485 YAXHTQVRAIR 517
Y + RA+R
Sbjct: 391 YFVYGVRRAVR 401
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 29.9 bits (64), Expect = 1.5
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = +2
Query: 38 VEGR*KRC*EEDCRPIHSQRLVRCQGSALCSARGKSAPRLSTVPXATKIASEGLKGRVFE 217
V GR +R E RP H L+RC+ + G S P T A KG +++
Sbjct: 11 VHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYK 70
Query: 218 VSLA 229
+ A
Sbjct: 71 LKAA 74
>07_03_0473 -
18525712-18525858,18526049-18526162,18526442-18526522,
18526787-18526865,18526902-18526996,18527092-18527170,
18527339-18527450,18527682-18527770,18527868-18527938,
18528846-18528962
Length = 327
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -3
Query: 257 FPRQCQLVDQPGKLRK---LFPSILPKQFSLXWVRLTSVVPTCLLLNIERSLDIVPIFAS 87
F +QC L+ + + L + LP FS W++L + + L + I + + VP+ +
Sbjct: 180 FTKQCNLIIYYAMIEQYDNLAQNSLPYNFS--WIKLKAPLVVALAIKIHQFVASVPVLKA 237
Query: 86 EWVDNLLLNTFFTALRQAFI 27
NL+L+ F+ RQ I
Sbjct: 238 ----NLVLSCTFSCNRQVSI 253
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -2
Query: 261 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 124
DL A A +T K +P P+ ++VAL + + +++ LAEH
Sbjct: 778 DLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 823
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 312 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 401
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 261 DLSASVSACRSARETSKTLPFNPSEAIFVALGTVDKRGADLPLAEH 124
DL A A T K +P P+ ++VAL + + +++ LAEH
Sbjct: 670 DLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEH 715
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -3
Query: 233 DQPGKLRKLFPSILPKQFSLXWVRLTSVVPTCLLLNIERSLDIVPIFASEWVDNLLLNTF 54
D P L I+ +Q + V TC+ IE +L+ V + S W + LL + +
Sbjct: 1217 DHPELSEHLCEEIMQRQLDAVDIIAQHQVLTCMAPWIE-NLNFVRLKESGWSERLLKSLY 1275
Query: 53 FTALRQAFIFPD 18
+ + FPD
Sbjct: 1276 YVTWKHGDQFPD 1287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,486
Number of Sequences: 37544
Number of extensions: 302241
Number of successful extensions: 781
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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