Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_N01
(583 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 195 3e-50
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 195 3e-50
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 195 3e-50
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 186 1e-47
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 182 4e-46
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 115 4e-26
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 195 bits (476), Expect = 3e-50
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRW 358
+IAS+ LKGRVFEVSLADLQ D D ERSFRKF LIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 359 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEII 538
MVKKWQTLIEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 539 TRDVTNSELXE 571
T +V+ ++L +
Sbjct: 176 TNEVSGADLKQ 186
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAP 119
+VDPF+RKDWYDVKAP
Sbjct: 21 VVDPFSRKDWYDVKAP 36
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 213
+MF RQ+G TLVNRTQ ++G+ F
Sbjct: 37 NMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 195 bits (476), Expect = 3e-50
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRW 358
+IAS+ LKGRVFEVSLADLQ D D ERSFRKF LIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 359 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEII 538
MVKKWQTLIEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 539 TRDVTNSELXE 571
T +V+ ++L +
Sbjct: 176 TNEVSGADLKQ 186
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAP 119
+VDPF+RKDWYDVKAP
Sbjct: 21 VVDPFSRKDWYDVKAP 36
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 213
+MF RQ+G TLVNRTQ ++G+ F
Sbjct: 37 NMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 195 bits (476), Expect = 3e-50
Identities = 94/131 (71%), Positives = 107/131 (81%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRW 358
+IAS+ LKGRVFEVSLADLQ D D ERSFRKF LIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 359 MVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEII 538
MVKKWQTLIEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 539 TRDVTNSELXE 571
T +V+ ++L +
Sbjct: 176 TNEVSGADLKQ 186
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAP 119
+VDPF+RKDWYDVKAP
Sbjct: 21 VVDPFSRKDWYDVKAP 36
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 213
+MF RQ+G TLVNRTQ ++G+ F
Sbjct: 37 NMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 186 bits (454), Expect = 1e-47
Identities = 89/123 (72%), Positives = 100/123 (81%)
Frame = +2
Query: 203 GRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 382
GRVFEVSLADLQ D D ERSFRKF LIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 383 IEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEIITRDVTNSE 562
IEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 563 LXE 571
L +
Sbjct: 134 LKQ 136
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 182 bits (442), Expect = 4e-46
Identities = 91/133 (68%), Positives = 104/133 (78%), Gaps = 2/133 (1%)
Frame = +2
Query: 179 KIASEGLKGRVFEVSLA-DLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
+IAS+ KGRVFEVSL DLQ D D E SFRKF LIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYR 115
Query: 356 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRK-KMCE 532
MVKKWQTLIEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +
Sbjct: 116 SMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTD 175
Query: 533 IITRDVTNSELXE 571
IIT +V+ ++L +
Sbjct: 176 IITNEVSGADLKQ 188
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +3
Query: 72 IVDPFTRKDWYDVKAP 119
+VDPF+RKDWYDVKAP
Sbjct: 21 VVDPFSRKDWYDVKAP 36
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 213
+MF RQ+G TLVNRTQ +G+ F
Sbjct: 37 NMFQTRQIGKTLVNRTQGQRIASDYFKGRVF 67
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 115 bits (277), Expect = 4e-26
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +2
Query: 329 MDLTTDKLRWMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVR 508
MDLTTDK R MVKKWQTLIEA ++ T DGY+LRVFCIGFT KD SQRKTCYA +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 509 AIRKKMCEIITRDVTNSELXE 571
IR +M +IIT +V+ ++L +
Sbjct: 61 KIRARMTDIITNEVSGADLKQ 81
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,921,223
Number of Sequences: 53049
Number of extensions: 498278
Number of successful extensions: 1468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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