Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_N01
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   148   2e-36
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       28   4.2  
Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  148 bits (359), Expect = 2e-36
 Identities = 78/132 (59%), Positives = 91/132 (68%)
 Frame = +2

Query: 176 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFXLIAEYVQGRNVLCNFHGMDLTTDKLR 355
           TKIASEGLKGRVFEVSL DL    ++E  FRKF LIAE VQG+NVL NFH M +T DKL 
Sbjct: 53  TKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLC 109

Query: 356 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAXHTQVRAIRKKMCEI 535
            +VKKW TLIEAN  V TTDGY LRVF I FT K     +KT Y   +++R IR +M   
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169

Query: 536 ITRDVTNSELXE 571
           I ++VT  +L E
Sbjct: 170 IEKEVTGCDLKE 181



 Score = 35.9 bits (79), Expect = 0.021
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 75  VDPFTRKDWYDVKAP 119
           VDPF+RK+WYD+KAP
Sbjct: 20  VDPFSRKEWYDIKAP 34



 Score = 32.3 bits (70), Expect = 0.26
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +1

Query: 121 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 213
           +MF+ RQVG TL+NRTQ  +     ++G+ F
Sbjct: 35  NMFNTRQVGKTLINRTQGTKIASEGLKGRVF 65


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 393 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINXNLRKDLSASVSACRSARE 220
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 219 TSKTLPFNPSEA 184
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 381  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINXNLRKDLSASVSACRSARE-TSKTL 205
            R  H    H  LS+  SMP ++  T+RP +  +   ++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 204  PFNPSEAI 181
              N SE++
Sbjct: 1182 VLNSSESL 1189


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -2

Query: 381  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINXNLRKDLSASVSACRSARE-TSKTL 205
            R  H    H  LS+  SMP ++  T+RP +  +   ++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 204  PFNPSEAI 181
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z81461-8|CAB03839.1|  442|Caenorhabditis elegans Hypothetical
           protein C04F12.10 protein.
          Length = 442

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 471 WLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQST 307
           W  + LL    Q     YP + + +    + V  FL+I+  +  +  +PW L ST
Sbjct: 70  WFNQLLLTA--QLIGGYYPFLWYATASYPLHVAVFLSINSIIETIIDLPWDLYST 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,750,192
Number of Sequences: 27780
Number of extensions: 254956
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)