Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_M22
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical pr... 191 3e-49
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 31 0.71
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 30 1.6
Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical pr... 28 6.6
>Z49967-5|CAA90251.1| 293|Caenorhabditis elegans Hypothetical
protein F54C9.5 protein.
Length = 293
Score = 191 bits (466), Expect = 3e-49
Identities = 91/158 (57%), Positives = 109/158 (68%)
Frame = +2
Query: 176 VQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 355
VQDKNKYNTPKYRLIVR++NKDV Q+AYS+IEGD +V +AYSHELPRYG+KVGLTNYAA
Sbjct: 38 VQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAA 97
Query: 356 AYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPGAFXCYLDVGLARTTTGA 535
AY+TG +YNVE + F LD+GLARTTTG+
Sbjct: 98 AYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEE-EGDRAPFKAVLDIGLARTTTGS 156
Query: 536 RVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVH 649
++F MKG DGG+NVPHS RF G+D ESK++NAE H
Sbjct: 157 KIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAH 194
Score = 71.3 bits (167), Expect = 5e-13
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRL 171
MG VKV+KNK YFKRYQVK +RRREGKTDYYARKRL
Sbjct: 1 MGLVKVIKNKAYFKRYQVKLRRRREGKTDYYARKRL 36
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 31.1 bits (67), Expect = 0.71
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 455 NVEPVDNGPGAFXCYL-DVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAESKK 631
N EP++ G F C+L TT+G+R G + L + ++FPG +
Sbjct: 68 NAEPIEKKNGGFNCHLHSKSPVLTTSGSRTVGTKTCLENKCLKRSFAFEKFPGRSLVNSS 127
Query: 632 F 634
F
Sbjct: 128 F 128
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 299 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 186
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -2
Query: 299 KQRTQYGHLQSESRPPGMLHLCWRDAQSDDI*VCYI-CS 186
+QR ++ + + P HLC R+++ DI CYI CS
Sbjct: 980 RQRVSCVKMEGDRQTPASEHLCDRNSKPSDIASCYIDCS 1018
>Z92806-5|CAB07255.2| 1251|Caenorhabditis elegans Hypothetical
protein K10G4.5 protein.
Length = 1251
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +2
Query: 194 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHI---VCAAYSHEL 313
YN P+YR +++L K C+ + GD++ +CA + EL
Sbjct: 548 YNDPEYRNVMKLKIKSPICE--QCEVTGDNLPFGICAEHETEL 588
>Z93390-6|CAB07675.4| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z93390-1|CAE46674.1| 540|Caenorhabditis elegans Hypothetical
protein T23B5.3b protein.
Length = 540
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
>Z80214-7|CAC42261.2| 816|Caenorhabditis elegans Hypothetical
protein T23B5.3a protein.
Length = 816
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 341 SDQPSHHNVATHVNKQRTQYGHLQSESRP 255
SD P HH +H + Q Q HLQ P
Sbjct: 17 SDVPMHHVYPSHHHHQHYQLPHLQQHPHP 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,039
Number of Sequences: 27780
Number of extensions: 305163
Number of successful extensions: 758
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -