Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_M21
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 48 7e-07
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 46 2e-06
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.99
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 1.3
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 1.3
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 26 2.3
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 4.0
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 5.3
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 5.3
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 7.0
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 25 7.0
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 7.0
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 7.0
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 25 7.0
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 24 9.3
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 9.3
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 9.3
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 24 9.3
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 24 9.3
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 48.0 bits (109), Expect = 7e-07
Identities = 22/41 (53%), Positives = 32/41 (78%)
Frame = +1
Query: 232 VVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRA 354
V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTRA
Sbjct: 44 VLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTRA 84
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 162 LFDKPTYEKLYKEVPQYKLITPACRI*KIK 251
+FDK +++ KEVP +K I+ + + ++K
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMK 50
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/40 (52%), Positives = 31/40 (77%)
Frame = +1
Query: 232 VVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 351
V+ +R+K+ GSLAR A+ +L E+G+I++V QH Q IYTR
Sbjct: 44 VLVDRMKINGSLARIAIRDLAERGVIQKVDQHSKQAIYTR 83
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 162 LFDKPTYEKLYKEVPQYKLITPACRI*KIK 251
+FDK +++ KEVP +K I+ + + ++K
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMK 50
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.99
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 190 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 92
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 64 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 162
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 1.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 171 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 70
YQ TP HE WT SS L H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 2.3
Identities = 22/68 (32%), Positives = 29/68 (42%)
Frame = +1
Query: 4 FPTSNDAXPRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRM 183
FP ++ R + RP +K RRR K A PR S P F S + + R
Sbjct: 72 FPLNDTHSSRARQHERPFRSRKSRRR-KGKKAFSPRPGSPPSPSFYRSGSQK------RA 124
Query: 184 RNCTRKSH 207
RN T K +
Sbjct: 125 RNLTTKDY 132
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 4.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 28 PRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS 147
P ++ LR SL HR R P + +PRR P + S
Sbjct: 333 PTSSQSLRLGSL--HRSRSPSPRSGRPRRSPSPSHLSIPS 370
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 5.3
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 223 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 92
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -2
Query: 386 IVYATGSSPLVARV*ITCPWCWTTCLMRP 300
I+Y T ++P++ + +T CW L P
Sbjct: 260 ILYKTNNNPIILPITVTVCSCWWLILSTP 288
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 43 RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRN 189
R PNS+K+ +R K P++ +S P+ +T +R + +RN
Sbjct: 150 RTTPNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 7.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 280 VLFSPGNLGPLIFQIRQAGVISLYC 206
+L P + GPLI ++R+ ISL C
Sbjct: 134 ILADPKSRGPLICKLRKEQEISLRC 158
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +1
Query: 10 TSNDAXPRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 135
T + P++ ++ K+H++ KD ++ +R+SG +K
Sbjct: 183 TGSALDPKKLEKITKKKKKEHKK--KDKESSSKKRKSGSSDK 222
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 7.0
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 238 SERLKVRGSLARRALIELREKGLIKQVVQHHGQVIY 345
+ERL + ++ R AL+EL++ LIKQ QV++
Sbjct: 185 NERLNL-DTIKRNALVELKKLRLIKQQESLRHQVMH 219
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 321 DYLFDETFFPKLDECSSR 268
D LF E+F +LD C R
Sbjct: 684 DELFSESFLSRLDNCEKR 701
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 23 PAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKSS*QVEQ 154
P QE RE S ++ + R+RW+ E + ++K + E+
Sbjct: 207 PEQELRENVRDPYSLLSKIQPRVRWQSHMESQKKKQKEEAEKEK 250
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 169 SNNTWLFNLSRTFPLDHFFFLAL 101
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 111 SWLCRHRILPSSSVFFEAVW 52
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 19 DAXPRRTRRLRPNSLKKHRRRRKDPVAAK 105
DA P++TR + + RRR D A+K
Sbjct: 621 DALPKKTRIIEFCEFSEEERRRYDDFASK 649
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 24.2 bits (50), Expect = 9.3
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 7 PTSNDAXPRRTRRLRPNSLKKH--RRRRKDPVAAKPRRRSGPKEKFVTS 147
PTS A P T N+ + RK+P ++ RR+G +++ T+
Sbjct: 466 PTSAVASPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMDRYATA 514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,729,686
Number of Sequences: 5004
Number of extensions: 36409
Number of successful extensions: 146
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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