Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M21
         (447 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    66   1e-11
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   1.2  
U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal enha...    27   6.2  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   6.2  
Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   8.2  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   8.2  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    27   8.2  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 32/48 (66%), Positives = 37/48 (77%)
 Frame = +1

Query: 232 VVSERLKVRGSLARRALIELREKGLIKQVVQHHGQVIYTRATXGDDPV 375
           VVSERLKVR SLA+  L EL+ KGL+K VV HHGQV+YTRAT   D +
Sbjct: 68  VVSERLKVRASLAKAGLKELQAKGLVKCVVHHHGQVVYTRATKEADVI 115



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 21/28 (75%), Positives = 24/28 (85%)
 Frame = +3

Query: 147 LNNQVLFDKPTYEKLYKEVPQYKLITPA 230
           LNN VLFD+ TY+KLYKEV  YKLITP+
Sbjct: 40  LNNMVLFDQATYDKLYKEVITYKLITPS 67


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 7   PTSNDAXPRRTRRLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 135
           P+ +   PRR RR    S  +  RRR+ P AA PRRR  P+ +
Sbjct: 457 PSKSPQAPRR-RRSPSGSKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 32  EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 133
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>U50199-2|AAP46272.1|  169|Caenorhabditis elegans Pharyngeal
           enhancer binding protein1, isoform b protein.
          Length = 169

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 190 CTRKSHSTS*SHLPVVSERLKVRGSLARRALIELREKGL 306
           CT+ SH+    H     E +KVRG + +  L  LR   L
Sbjct: 112 CTKGSHNHPPRHHVAEIEFIKVRGEITQSQLSRLRASAL 150


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
 Frame = -1

Query: 204 GLPCTVSHTWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 85
           GL    +  W  YQ    CS    TC   F W     W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z81085-3|CAB03115.1|  769|Caenorhabditis elegans Hypothetical
           protein F46F3.4 protein.
          Length = 769

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 247 LKVRGSLARRALIELREKGLIKQVVQHHGQVIYTR 351
           L V+GS+ + A +ELR   +  Q +  H + +Y R
Sbjct: 191 LNVQGSMLKEAQLELRNASMRAQSLNKHLEEMYRR 225


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 73  RRRRKDPVAAKPRRRSGP 126
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 73  RRRRKDPVAAKPRRRSGP 126
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 75  SVFFEAVWPKPSRPSWAGIV 16
           S+FF A+WPKP R   + IV
Sbjct: 71  SLFFVAIWPKPVRMVHSTIV 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,916
Number of Sequences: 27780
Number of extensions: 210752
Number of successful extensions: 660
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)