Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M17
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    29   0.41 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   6.7  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   6.7  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   8.9  

>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 244 RNKTSSYFVLLDRAGFQCYITMCSVQK 324
           ++ T    +LL+  GF+CY ++CSV++
Sbjct: 145 KSHTERQKILLEHFGFKCYCSVCSVEE 171


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +1

Query: 361 YHITHDLYTHILRCDCRYRCLHENRY 438
           Y    DLY  +  CDCRY      R+
Sbjct: 155 YTCLKDLYCSVSCCDCRYGICSPERF 180


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 160 INDIEICGQQQANLDRGKI 104
           +N  EICG Q  N+DR ++
Sbjct: 152 LNTCEICGNQLKNVDRNQL 170


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 219 TSFMMGE*LSSLIPIIDDMS*MTLKYAVSN 130
           TSF++    S ++P+I DMS    +Y +S+
Sbjct: 425 TSFLLSPHNSPVVPVIQDMSRPLNEYLISS 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,679
Number of Sequences: 5004
Number of extensions: 39244
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)