Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M17
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492     32   0.43 
04_04_0225 + 23745404-23747788                                         29   2.3  

>03_06_0357 - 33359403-33359579,33361111-33361245,33362304-33362492
          Length = 166

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 284 LAFNVILLCAVYRK--DLCLMTTFVYFGITSLTTSILIYSVVIVATGAFMKIAIVLXILF 457
           +A+NV   C   R    + ++      G+T     +  Y   + A GA   +A+V+ +LF
Sbjct: 1   MAWNVFRFCTALRGLGSIMILLVLSIVGVTYYAVVVYNYGPALFAGGASTLLALVVLLLF 60

Query: 458 QLYVILLVRS 487
              +++L+ S
Sbjct: 61  HFLLVMLLWS 70


>04_04_0225 + 23745404-23747788
          Length = 794

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 252 NQFLFCATRQSWL--SMLYYYVQCTEKI 329
           N+F+FC  R SW    +LY + +C+ +I
Sbjct: 597 NEFIFCTIRPSWYQRGLLYLHEECSTQI 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,673,298
Number of Sequences: 37544
Number of extensions: 228185
Number of successful extensions: 417
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)