Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M17
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   0.60 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   9.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 35  YNMDEPFQCVKSFLLNFKLNNCCYFASVKIGLLLTAYF 148
           YN   P QC   FL   +L + C  ++ ++ L L  +F
Sbjct: 8   YNNVSPLQCTSPFLGGPQLTDVCSASNGELFLALLNFF 45


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 445 KNNSDFHEGTGSDNHNG 395
           +NNS  H G  S +H+G
Sbjct: 391 ENNSRGHSGQSSSHHHG 407


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 224 DSLLEDNATKPVPILCYS 277
           D + +D+A K +P+ C S
Sbjct: 47  DEMKKDSAVKGIPVSCIS 64


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 224 DSLLEDNATKPVPILCYS 277
           D + +D+A K +P+ C S
Sbjct: 47  DEMKKDSAVKGIPVSCIS 64


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 224 DSLLEDNATKPVPILCYS 277
           D + +D+A K +P+ C S
Sbjct: 47  DEMKKDSAVKGIPVSCIS 64


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = -1

Query: 274 VAQNRNWFCCVVLKETVLN*LYDGRITFIADSYYR*YVINDIEICGQQQANLD 116
           VAQN      ++  + + N  Y GR+  I  + Y   + N ++       N D
Sbjct: 345 VAQNEKTLQMIISVKIIQNLAYSGRMNRIHKNEYMLALSNRMQKIVNNDFNFD 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,651
Number of Sequences: 438
Number of extensions: 2895
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)