Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M15
         (490 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    88   4e-18
U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical p...    28   3.2  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 41/63 (65%), Positives = 47/63 (74%)
 Frame = +2

Query: 245 LLGGKVHGSLARAGKVKGQTPKVEXXXXXXXXTGRAXRRIQYNRRFVNVVQTFGRRRGPN 424
           LLGGKVHGSLARAGKV+ QTPKV+         GRA RR+QY RR+VNV    G++RGPN
Sbjct: 68  LLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVNVASGPGKKRGPN 127

Query: 425 SNS 433
           SNS
Sbjct: 128 SNS 130


>U80452-10|AAB37853.1|  214|Caenorhabditis elegans Hypothetical
           protein C16C8.11 protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 32  ILQLCSCISEGNQTHVLDVNGQESIGQIKERIRTLAAVGDEXLTLSLCGAPLH 190
           ++ LC  +S   +   +  N  ES+ Q+K +I     +      L L G PL+
Sbjct: 141 VVDLCIAVSMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLY 193


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 342 VFXFFFCCFSTLGVCPLTLPARAKDPCTLPPSNGTV 235
           +F F     + + +     P RAK P T PPS  TV
Sbjct: 5   IFTFLALLAAAINIGEGAKPCRAKRPTTEPPSTTTV 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,505
Number of Sequences: 27780
Number of extensions: 170506
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)