Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M14
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   157   1e-39
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.4  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    26   4.1  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   5.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   7.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  157 bits (382), Expect = 1e-39
 Identities = 84/178 (47%), Positives = 106/178 (59%), Gaps = 1/178 (0%)
 Frame = +1

Query: 121 NYLAXKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTWSQGTS 297
           ++L  KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A        T 
Sbjct: 17  DFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA--------TL 68

Query: 298 PLXXXXXXXXXXXXXXXXXXXXVDLFGSGDEEXDAQXERIREXRLKAYADXKSKKPALIA 477
           P                     +DLFGS DEE D + ERI+  R+  Y   K+ KP  + 
Sbjct: 69  PGTAKEVSAYGPEGAAAAEEDEIDLFGS-DEEEDPEAERIKAERVAEYNKKKAAKPKAVH 127

Query: 478 KSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDD 651
           KS + LDVKPWDDET M E+E  VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDD
Sbjct: 128 KSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDD 185


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +1

Query: 121  NYLAXKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 264
            NYL+   Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4653 NYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 294 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 184
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -3

Query: 591 FGGSPEKAFHFNSAYLVFHFXHIGFIIP-WLDIKENR 484
           FG S     HF+  Y VF    IG I P W++   N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/70 (18%), Positives = 30/70 (42%)
 Frame = +1

Query: 373 FGSGDEEXDAQXERIREXRLKAYADXKSKKPALIAKSSILLDVKPWDDETDMXEMENQVR 552
           F S   +     ++ +    KA  +  ++    +    + + ++ W++E    + E QVR
Sbjct: 278 FSSNGPKIKQAKKKQKRKSNKAETEGTNEPETSVQIDPLNVSMENWENEMKNLDCETQVR 337

Query: 553 TIEMEGLLWG 582
            + +  L WG
Sbjct: 338 QLALYLLCWG 347


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 305 PPVLNPRLPPQQRKTTMTT 361
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 244 DYTIVVRGEG*RPAPCQLAQILEHQLE 164
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,650
Number of Sequences: 5004
Number of extensions: 44174
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)