Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_M14
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 135 3e-32
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 126 1e-29
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 125 4e-29
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 33 0.20
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 29 4.3
01_07_0155 - 41541475-41541831,41541922-41542051,41542144-415424... 28 5.6
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 28 5.6
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 28 7.5
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 135 bits (326), Expect = 3e-32
Identities = 79/181 (43%), Positives = 100/181 (55%), Gaps = 5/181 (2%)
Frame = +1
Query: 124 YLAXKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAERKTWSQ 288
YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+ S AE +
Sbjct: 39 YLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKV 98
Query: 289 GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGDEEXDAQXERIREXRLKAYADXKSKKPA 468
++ VDLFG EE + + + E A K K+
Sbjct: 99 ESTACSVSPTADQKAPAADEEDDDDVDLFG---EETEEEKKAAEERAAAVKASGKKKESG 155
Query: 469 LIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIED 648
KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI KLQIM I D
Sbjct: 156 ---KSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVD 212
Query: 649 D 651
D
Sbjct: 213 D 213
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 126 bits (305), Expect = 1e-29
Identities = 73/180 (40%), Positives = 98/180 (54%), Gaps = 4/180 (2%)
Frame = +1
Query: 124 YLAXKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWSQGTS-- 297
+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ + + G +
Sbjct: 20 HLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLP 79
Query: 298 --PLXXXXXXXXXXXXXXXXXXXXVDLFGSGDEEXDAQXERIREXRLKAYADXKSKKPAL 471
+DLFG EE ++ + R + A K K+
Sbjct: 80 GGGAASSAAAAAPAAKDADEDDDDLDLFGDETEED----KKAADERAASKASSKKKESG- 134
Query: 472 IAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDD 651
KSS+LLDVKPWDDETDM ++E VR+++MEGL WGASKLVPVGYGI KLQIM I DD
Sbjct: 135 --KSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDD 192
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 125 bits (301), Expect = 4e-29
Identities = 76/184 (41%), Positives = 95/184 (51%), Gaps = 8/184 (4%)
Frame = +1
Query: 124 YLAXKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAER---KT 279
YL +SY+SGY S D+ V+ AP+++ +V RW+ I S A+ K
Sbjct: 20 YLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKV 79
Query: 280 WSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGDEEXDAQXERIREXRLKAYADXKSK 459
S VDLFG EE + + + E A K K
Sbjct: 80 ESTAVPSASTPDVADAKAPAADDDDDDDVDLFG---EETEEEKKAAEERAAAVKASGKKK 136
Query: 460 KPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCV 639
+ KSS+LLDVKPWDDETDM ++E VR ++MEGLLWGASKLVPVGYGI KLQIM
Sbjct: 137 ESG---KSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMT 193
Query: 640 IEDD 651
I DD
Sbjct: 194 IVDD 197
>02_01_0301 +
2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 33.1 bits (72), Expect = 0.20
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 382 GDEEXDAQXERIREXRLKAYADXKSKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIE 561
G+EE + + + I + K + A+ ++ S +LDV+ W D +++ +
Sbjct: 380 GNEELEEELQGIGDDIAKKLRRSPLEAKAVASRLSRMLDVEIWKHARDSKQLDGNI---- 435
Query: 562 MEGLLWGASKLVP 600
ME LLW +L P
Sbjct: 436 MENLLWSYQRLDP 448
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = +1
Query: 370 LFGSGDEEXDAQXERIREXRLKAYADXKSKKPALIAKSSILLDVKPWDDETDMXEMENQV 549
+FG E+ E+ R+ L+ + + P +A+ + + D + +N+V
Sbjct: 482 VFGEDYEDLQKSLEQARKLALRKQEETAASGPLAVAELATARIGQKDADAAEGDAQQNKV 541
Query: 550 RTIEMEGLLWG 582
EME +WG
Sbjct: 542 VITEMEEFVWG 552
>01_07_0155 -
41541475-41541831,41541922-41542051,41542144-41542433,
41542526-41542707,41542788-41543007,41543117-41543135,
41543222-41543382
Length = 452
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -3
Query: 648 VLDDTHNLQFIYAIPNRHKFGGSPEKAFHFNSAYLVFHFXHIGFIIPWLDIKENRGLGNE 469
V D N++F++ N G +KA+ L+ + IG+ ++E +
Sbjct: 145 VAKDRPNIEFVFTHLNTENGMGIHDKAYILAVGLLMSQYSVIGYDTSAHMVEETKNADRS 204
Query: 468 GWFLRLXVSICFQTXFSNSFXLCILFLVT 382
G + + S+ F T F + L + +VT
Sbjct: 205 G-PIGIITSVLFATVFGWIYLLALTSVVT 232
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Frame = +1
Query: 148 SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 249
+G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 92 NGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +1
Query: 124 YLAXKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIASYTPAERKT 279
+LA Y++G S AD + K P A L PHV W++ I+S PA +KT
Sbjct: 154 HLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS-RPAWKKT 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,560,261
Number of Sequences: 37544
Number of extensions: 313816
Number of successful extensions: 757
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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