Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M08
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.62 
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    26   3.3  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    26   4.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   5.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   5.8  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   7.6  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 113 SILKSIERYNPANLEILXRYVEMQSRXNTYDLGANLAVLKLY 238
           S+LK  ++ N  +LE+L  + + +     Y   ANL  LK+Y
Sbjct: 482 SLLKYPKKENVISLELLNFFSQFKCNKKDYSFVANLGSLKMY 523


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 401 LEQCDFAQFWNRVHQMPELCSRISGFHDSI 490
           LE C+F   W  + + P+LCS +  + D I
Sbjct: 278 LEACEF---WLAIAEQPDLCSALGPYLDKI 304


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 114 LYSRALKGTIQLIWKYXNDMSKC 182
           LYSR   GT +L+  Y N++  C
Sbjct: 198 LYSRTYSGTKKLVEDYVNELKVC 220


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125 SIERYNPANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKF-NAXIT 274
           SI +Y P+ L  L RY  + S     +  +N   +  Y F PE F NA +T
Sbjct: 327 SIFQYFPS-LSKLFRYYGLHSTRTYVEQFSNGVTIISYNFKPELFKNAAVT 376


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  AETMKQTVASILKSIERYNPANLEILXRYVEMQSRXNT 199
           ++ MKQ+  S++ S +  +    E+   +V MQS+ NT
Sbjct: 775 SKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNT 812


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
 Frame = +3

Query: 342 FLNPWWKMRQFLKSNT*PTFWSNV-TLLSFGIEYT----KCQSCAVVSVASMTQSESLSV 506
           F+  W  MR +L        W  + T+ SF +++     KC     V++  +T  + +++
Sbjct: 283 FVFVWIYMRHYLNFKIMWAVWGTMRTINSFDLDWAAEQYKCWISRDVTLILLTALQLVNI 342

Query: 507 MWLVSHFRL 533
            WL+   R+
Sbjct: 343 YWLILILRI 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,777
Number of Sequences: 5004
Number of extensions: 43523
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)