Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M08
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       29   2.0  
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 387  YLI*EIVSFSTTDSRSKHLHNVKSVCGKLVR 295
            YL+  + SF TT  R+ H+H +KS+   L+R
Sbjct: 1358 YLLNSLHSFLTTIHRAIHVHKIKSLLNFLIR 1388


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 134 RYNPANLEILXRYVEMQ 184
           RYNP NL++L  YV +Q
Sbjct: 682 RYNPENLKVLEHYVHLQ 698


>SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 363 FSTTDSRSKHLHNVKSVCGKLVR 295
           FS  +  +KHL N  +VCGK ++
Sbjct: 180 FSIIEKAAKHLDNTTNVCGKCIQ 202


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +3

Query: 405  SNVTLLSFGIEYTK------CQSCAVVSVASMTQSESLSVMWLVSHFRL 533
            S VT+ SF   Y K      C+ C V  V   T S ++ V W ++H+ L
Sbjct: 1356 SRVTVHSFQSSYVKTALGVLCKICKVCLVVISTLSLAVYVRWSMAHYAL 1404



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 46   FFYKLITSTDRYNGRNYETDSSIYT 120
            F+Y   T+ D Y    YETD SI T
Sbjct: 1687 FYYHRDTNDDLYAASGYETDQSIQT 1711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,096,927
Number of Sequences: 59808
Number of extensions: 302029
Number of successful extensions: 683
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)