Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_M08
(562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-10|CAB04732.1| 240|Caenorhabditis elegans Hypothetical p... 109 1e-24
AY731377-1|AAW63419.1| 240|Caenorhabditis elegans eukaryotic in... 109 1e-24
Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 27 7.0
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 27 7.0
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 27 7.0
>Z81592-10|CAB04732.1| 240|Caenorhabditis elegans Hypothetical
protein T16G1.11 protein.
Length = 240
Score = 109 bits (262), Expect = 1e-24
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Frame = +2
Query: 89 ETMKQTVASILKSIERYNPANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKFNAX 268
E +++ + ++ + RYNP N+ L V+ N YD L +LKLYQ NPEK++
Sbjct: 4 EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63
Query: 269 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 442
+ Q+LLK L P +DF L KCL+ + + ++ + +I L +LE C+FA FW V
Sbjct: 64 VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123
Query: 443 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLXNLL 562
++P++ + GF D+++ + C V+ +TFQ I+K L LL
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLL 178
>AY731377-1|AAW63419.1| 240|Caenorhabditis elegans eukaryotic
initiation factor eIF-3.K protein.
Length = 240
Score = 109 bits (262), Expect = 1e-24
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 17/175 (9%)
Frame = +2
Query: 89 ETMKQTVASILKSIERYNPANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKFNAX 268
E +++ + ++ + RYNP N+ L V+ N YD L +LKLYQ NPEK++
Sbjct: 4 EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63
Query: 269 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 442
+ Q+LLK L P +DF L KCL+ + + ++ + +I L +LE C+FA FW V
Sbjct: 64 VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123
Query: 443 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLXNLL 562
++P++ + GF D+++ + C V+ +TFQ I+K L LL
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLL 178
>Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical
protein F13B12.2 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 341 LLESVVENETISQIKYLADILEQCD---FAQFWNRVHQMPELCSRISGF-HDSIRK 496
LL+ E I IK+ DI + + ++W+ V +MPE S S F + SIR+
Sbjct: 233 LLQMGRYTEAIESIKFYYDIEDSDEDEIIKEYWDMVPEMPEQLSLCSAFSNSSIRR 288
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 412
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 412
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 412
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 412
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 311 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 412
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,532
Number of Sequences: 27780
Number of extensions: 240665
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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