Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M08
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   8.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   8.5  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 369 VSFSTTDSRSKHLHNVKSVCGKLVRAFKSI 280
           VS  T D     LH V+SVC K +   + I
Sbjct: 14  VSAMTLDELKSGLHTVQSVCMKEIGTAQQI 43


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 143 PANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKFNAXITCQIL 286
           PA+ +I  R +++     TY+   ++AV    + NP  F   ++  IL
Sbjct: 87  PAHRKIAARLIDIFMGMRTYEDFLSVAVYCRDRLNPNLFIYALSVAIL 134


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +1

Query: 31  KIV*LFFYKLITSTDRYNGRNYETDSSIY 117
           KI+     K I + + YN  NY     +Y
Sbjct: 80  KIISSLSNKTIHNNNNYNNNNYNNYKKLY 108


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 289 QKYLTCNVCVKLFG 248
           +K  TC++C K FG
Sbjct: 229 EKPYTCDICGKSFG 242



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 514 NHMTDKLSD*VMEATDTTAQLWHLVYSIPKLSKVTLLQN 398
           NH T++ +D V    +T     + +YS  + S+  L+ N
Sbjct: 315 NHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLISN 353


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 318 ILHCASAYFLNPWWKMRQFL 377
           +L    + F+NPW K  +F+
Sbjct: 386 VLETEWSSFINPWTKKLEFV 405


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 318 ILHCASAYFLNPWWKMRQFL 377
           +L    + F+NPW K  +F+
Sbjct: 92  VLETEWSSFINPWTKKLEFV 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,465
Number of Sequences: 438
Number of extensions: 2913
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)