Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M06
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   0.97 
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   1.7  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   5.2  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   6.8  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.8  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.0  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   9.0  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   9.0  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 236 AIDLLTNDECRLLLEVEDFFN 298
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 369 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 458
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 479 LEEKVDLPSIFENISEVPERVDPQPPAAVLASSPFVTSQPT-EELLREFETV 631
           +E + D+ S   N S +P+      P  V+ SSP   + P+  +++ + +T+
Sbjct: 470 IEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQKDTI 521


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 437 LDSQCKQENIFSNWLEEKVD-LPSIFENISEVPERVDPQP 553
           +D  CKQ+ +FS   E++ D L SI   +S +  ++   P
Sbjct: 242 IDQLCKQKEVFSAEKEKRSDHLKSIQSEVSNLWNKLQVSP 281


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 254 NDECRLLLEVEDFFNDDC 307
           NDECR L +   FF+ +C
Sbjct: 535 NDECRRLKQCNHFFHREC 552


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 379  WRVETRSVIDFDXRCSARKVFKQITIIIEEILNFEQQTALIVSEQIDGR 233
            W   T+ V     R S RKV + + +  EE    +++ ALI  + +  R
Sbjct: 2143 WSTPTKLVEPSQFRASPRKVDQAVVLSSEEKEILQKKYALIAEDNLIAR 2191


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 515 NISEVPERVDPQPPAAVLASS 577
           N++ +P  V P PPA + ASS
Sbjct: 221 NLARIPSDVKPVPPAHLSASS 241


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 396 NQVPPNSLTIFCSS*TVNANKRIFSPTG*RKKLTSLRSSKTFLKFLNAWTHNPRQ 560
           N +  N+     ++ T+N ++R+ +P+G R     L  S      LN   H  RQ
Sbjct: 549 NNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSPASYDSLNVPKHRRRQ 603


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,050
Number of Sequences: 5004
Number of extensions: 43641
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)