Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M06
         (631 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)                 27   9.5  
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)                27   9.5  
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
          Length = 200

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 535
           ++ D Q K++N FS WLEE  D   I E   ++P+
Sbjct: 31  EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 63


>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
          Length = 406

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 431 QQLDSQCKQENIFSNWLEEKVDLPSIFENISEVPE 535
           ++ D Q K++N FS WLEE  D   I E   ++P+
Sbjct: 324 EKADRQTKKKNGFSLWLEENRD--QIEEENPDIPD 356


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 215  DSHSLL**FSSTNANKSARGIDVLMMLVFCEDGLICPVR 99
            D +S +   S TN   +  G++ L    FC++G  C V+
Sbjct: 1069 DGNSTIGKTSGTNGGSNDTGVEALCKNTFCKNGYQCTVK 1107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,138,364
Number of Sequences: 59808
Number of extensions: 341446
Number of successful extensions: 795
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)