Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M03
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q96397 Cluster: LRG5 protein; n=1; Chlamydomonas reinha...    35   1.5  
UniRef50_UPI000155302F Cluster: PREDICTED: hypothetical protein;...    34   2.6  
UniRef50_Q55EK0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_UPI0000EBC31A Cluster: PREDICTED: similar to ligand-ind...    33   6.0  
UniRef50_Q4SU28 Cluster: Chromosome undetermined SCAF14025, whol...    33   6.0  
UniRef50_A0D170 Cluster: Chromosome undetermined scaffold_34, wh...    33   6.0  
UniRef50_UPI0000F1EA07 Cluster: PREDICTED: similar to Notch 2; n...    33   7.9  

>UniRef50_Q96397 Cluster: LRG5 protein; n=1; Chlamydomonas
           reinhardtii|Rep: LRG5 protein - Chlamydomonas
           reinhardtii
          Length = 640

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
 Frame = -2

Query: 559 WL-CMPVWGRK-QWQWWHCTLLRKQVLLQPLPFGLXRWLYVXLCI*RRCGVCRFS-CRCI 389
           W+ C+P+WG    W W       +     P P    RWL        RCG       RC 
Sbjct: 495 WMTCLPMWGSGGTWPWRPLMTPSRTCACLPTPC-CSRWLRRW-----RCGWAPGGRWRCS 548

Query: 388 ICRLWLWGCRCR 353
           +C  W WGC  R
Sbjct: 549 LCSCWRWGCSGR 560


>UniRef50_UPI000155302F Cluster: PREDICTED: hypothetical protein;
           n=1; Mus musculus|Rep: PREDICTED: hypothetical protein -
           Mus musculus
          Length = 239

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -2

Query: 163 GVPGLTTICSTSCSRAVLGSSVSEPKII 80
           GVP LT I ST CSR + G     PKII
Sbjct: 206 GVPVLTVINSTGCSRHIFGIGTEAPKII 233


>UniRef50_Q55EK0 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 646

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 435 HRXTYSXRCSPKGSGCSKTCLRSSVQCHHCHCFLPHTG 548
           H  T S  C+  G GCS +  R ++Q   C C LP  G
Sbjct: 541 HNPTNSSDCTINGIGCSNSNGRCNLQSKQCQCELPFYG 578


>UniRef50_UPI0000EBC31A Cluster: PREDICTED: similar to
           ligand-independent activating molecule for estrogen
           receptor; n=1; Bos taurus|Rep: PREDICTED: similar to
           ligand-independent activating molecule for estrogen
           receptor - Bos taurus
          Length = 273

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 447 YSXRCSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHSH 560
           Y  RC+     C + C   S+ CH  HC +  T +H H
Sbjct: 146 YHCRCTTPSLHCHRHCTTPSLHCHR-HCTVTVTALHCH 182


>UniRef50_Q4SU28 Cluster: Chromosome undetermined SCAF14025, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14025,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 1957

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
 Frame = +3

Query: 414 TPHLRHMHRXTYSXRCSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHSHPGTDTXTNRQ- 590
           TP     H  +    CSP       TC ++S   + CHC     G +     D     Q 
Sbjct: 166 TPGFTGKHCESSYIPCSPSPCLNGGTCHQTSETSYSCHCLPGFNGTNCENNIDDCPGNQC 225

Query: 591 -DGVANSYGISTLNCQ 635
            +G     G++T NCQ
Sbjct: 226 ANGGTCIDGVNTYNCQ 241


>UniRef50_A0D170 Cluster: Chromosome undetermined scaffold_34, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_34,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 438

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
 Frame = +3

Query: 420 HLRHMHRXTYSXRCSPKGSGCSK-TCLRSSVQCHHCHCFLPHTGIHSHPGTDTXTNRQDG 596
           H    H+      CS +     K  CL+   QC HC  + P   I SH        ++  
Sbjct: 49  HEEEYHKKEKCQYCSLESEDLKKHKCLKKPKQCMHCDLYFPTDQIFSHETQCGSRTQKCD 108

Query: 597 VANSY 611
           + N+Y
Sbjct: 109 ICNNY 113


>UniRef50_UPI0000F1EA07 Cluster: PREDICTED: similar to Notch 2; n=1;
           Danio rerio|Rep: PREDICTED: similar to Notch 2 - Danio
           rerio
          Length = 1011

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 459 CSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHSHPGTDTXTNR--QDGVANSYGISTLNC 632
           CSP       TC +++   + CHC     G +     D   +   Q+G     G++T NC
Sbjct: 204 CSPSPCQNGGTCRQTTETTYVCHCLPGFNGTNCEVNIDDCPDHRCQNGATCMDGVNTYNC 263

Query: 633 Q 635
           Q
Sbjct: 264 Q 264


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 455,255,111
Number of Sequences: 1657284
Number of extensions: 7328250
Number of successful extensions: 20270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20245
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)