Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    28   1.4  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    27   2.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.2  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   9.5  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 471 GSGCSKTCLRSSVQCHHCHCFLPHTGIHSH 560
           GS  S +   ++V CH CH + P    H H
Sbjct: 170 GSTRSDSVFVNTVYCHTCHLYRPPRASHCH 199


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 115 VLGSSVSEPKIIICSHHLPIFRVETTRRFSGKGRR 11
           +LG S+++P  ++  H +    V   + FSGKG+R
Sbjct: 254 LLGVSMNQPIDVVVQHRMDEDYVAPFKPFSGKGQR 288


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +3

Query: 447 YSXRCSPKGSGCSKTCLRSSVQCHHCH-CFLPHTGIHSHPGTD 572
           Y    S   S CS  CL SS   ++ H CF  +T   SHP  D
Sbjct: 185 YDLPFSILNSPCSDLCLNSSSLANYLHGCFYHNT--LSHPYQD 225


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 595 PSCLFVXVSVPGWLCMPVWGRKQW 524
           P CLF+   V       +W RK W
Sbjct: 712 PDCLFINTQVKHHEHWKLWARKNW 735


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,601
Number of Sequences: 5004
Number of extensions: 28357
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)