Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M03
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358539-1|AAQ88903.1|  100|Homo sapiens SAMK3000 protein.             31   3.6  
AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1, transl...    30   8.3  
AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1, transl...    30   8.3  
AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens ...    30   8.3  
AB231861-1|BAE19679.1| 1950|Homo sapiens low-density lipoprotein...    30   8.3  
AB084910-1|BAD83615.1| 1905|Homo sapiens low density lipoprotein...    30   8.3  
AB011540-1|BAA32468.1| 1576|Homo sapiens MEGF7 protein.                30   8.3  

>AY358539-1|AAQ88903.1|  100|Homo sapiens SAMK3000 protein.
          Length = 100

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 496 KQVLLQPLPFGLXRWLYVXLCI*RRCGVCRFSCRCIICRLWLWGCRCRVGSSC 338
           K VL    P+ +  ++Y  +C+     VC + C C++C      C CR    C
Sbjct: 5   KSVLPLLNPYCVLAFVYACMCVRAHVCVCVYMCMCVLCAC---VCTCRKKVMC 54


>AL592301-5|CAI13934.1| 2555|Homo sapiens Notch homolog 1,
           translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 459 CSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHSHPGTD--TXTNRQDGVANSYGISTLNC 632
           CSP       TC  +    H C C    TG +     D     N ++G A   G++T NC
Sbjct: 222 CSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNC 281

Query: 633 Q 635
           +
Sbjct: 282 R 282


>AL354671-1|CAI16149.1| 2555|Homo sapiens Notch homolog 1,
           translocation-associated (Drosophila) protein.
          Length = 2555

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
 Frame = +3

Query: 459 CSPKGSGCSKTCLRSSVQCHHCHCFLPHTGIHSHPGTD--TXTNRQDGVANSYGISTLNC 632
           CSP       TC  +    H C C    TG +     D     N ++G A   G++T NC
Sbjct: 222 CSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNC 281

Query: 633 Q 635
           +
Sbjct: 282 R 282


>AK022609-1|BAB14128.1|  307|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12547 fis, clone NT2RM4000634. ).
          Length = 307

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 454 WLYVXLCI*RRCGVCRFSCRCIICRLWLWGCRCRVGS 344
           W+++ +C+ R CG C F C C      + GC C  G+
Sbjct: 26  WVHICVCV-RLCG-CTFVCVCACVCACVCGCLCVWGT 60


>AB231861-1|BAE19679.1| 1950|Homo sapiens low-density lipoprotein
            receptor-related protein 4 protein.
          Length = 1950

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 420  HLRHMHRXTYSXRCSPKGSGCSKTCLRS 503
            H+ H  R   S  C+ +  GCS  CLRS
Sbjct: 1041 HVFHRRRPPVSTPCAMENGGCSHLCLRS 1068


>AB084910-1|BAD83615.1| 1905|Homo sapiens low density lipoprotein
            receptor-related protein 10 protein.
          Length = 1905

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 420  HLRHMHRXTYSXRCSPKGSGCSKTCLRS 503
            H+ H  R   S  C+ +  GCS  CLRS
Sbjct: 993  HVFHRRRPPVSTPCAMENGGCSHLCLRS 1020


>AB011540-1|BAA32468.1| 1576|Homo sapiens MEGF7 protein.
          Length = 1576

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 420 HLRHMHRXTYSXRCSPKGSGCSKTCLRS 503
           H+ H  R   S  C+ +  GCS  CLRS
Sbjct: 664 HVFHRRRPPVSTPCAMENGGCSHLCLRS 691


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,271,021
Number of Sequences: 237096
Number of extensions: 1233302
Number of successful extensions: 3360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3358
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)