Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M02
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0053 + 11721658-11721689,11721960-11722710                       29   2.1  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    29   2.1  
03_05_1070 + 30125131-30127029                                         28   6.4  

>08_02_0053 + 11721658-11721689,11721960-11722710
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 279 IDAVMTARI-LDFEVCCNYYRRDRAV 353
           ID  +T RI +DF VC +Y+R DR +
Sbjct: 89  IDTTITDRIFMDFSVCPSYFRSDRTL 114


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 418 LXHNYTREIVRLMTT----LPVPSNRNTLSQSC 504
           L H Y    VR M +    LP+P N+N LSQSC
Sbjct: 408 LFHEYISTKVRDMASHGEYLPIPLNQNLLSQSC 440


>03_05_1070 + 30125131-30127029
          Length = 632

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 542 AAGGKNNCAWRSVQDCDS-VLRLD 474
           A GG+   AWRS    DS VLRLD
Sbjct: 521 AGGGRGEAAWRSTATQDSQVLRLD 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,148,218
Number of Sequences: 37544
Number of extensions: 243785
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)