Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M02
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)                   28   6.6  

>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 424 HNYTREIVRLMTTLPVPSNRNTLSQSCTERHAQL 525
           H +T +I +L  T+P     NTL + C +RHA L
Sbjct: 546 HAFTNDIEQLPFTIPRLEMLNTLLRECIDRHAPL 579


>SB_35584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 321 CCNYYRRDRAVCXKSKTPTPQDVSSHSS 404
           CC+YYR       +S+TP  Q VS  S+
Sbjct: 320 CCSYYRTKLTTACQSQTPLQQAVSKLSN 347


>SB_40570| Best HMM Match : DUF1602 (HMM E-Value=3.7)
          Length = 152

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 466 VKWSLISRSHEYNYVXNNGSTELCEETS 383
           V+W +I  S  Y+     GS +LC +TS
Sbjct: 58  VQWIIIPLSSHYSERTGKGSAQLCSQTS 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,624
Number of Sequences: 59808
Number of extensions: 308384
Number of successful extensions: 639
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)