Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M02
         (591 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT025952-1|ABG02196.1|   93|Drosophila melanogaster IP15265p pro...    29   6.2  
AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,...    29   6.2  
AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,...    29   6.2  

>BT025952-1|ABG02196.1|   93|Drosophila melanogaster IP15265p
           protein.
          Length = 93

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 361 RARHLRRRMSPRIVPWNRCLX-HNYTREIVRLMTTLPVPSNRNTLSQS 501
           R+R    R S   +P N  L  ++  +E  + +T LP+PSN  ++S+S
Sbjct: 27  RSRSRSERASSLALPLNSLLDFYDKQQERCKSVTLLPLPSNSGSISES 74


>AE013599-450|AAF59230.1| 1379|Drosophila melanogaster CG2105-PA,
           isoform A protein.
          Length = 1379

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 361 RARHLRRRMSPRIVPWNRCLX-HNYTREIVRLMTTLPVPSNRNTLSQS 501
           R+R    R S   +P N  L  ++  +E  + +T LP+PSN  ++S+S
Sbjct: 27  RSRSRSERASSLALPLNSLLDFYDKQQEQCKSVTLLPLPSNSGSISES 74


>AE013599-449|AAS64900.1| 1397|Drosophila melanogaster CG2105-PB,
           isoform B protein.
          Length = 1397

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +1

Query: 361 RARHLRRRMSPRIVPWNRCLX-HNYTREIVRLMTTLPVPSNRNTLSQS 501
           R+R    R S   +P N  L  ++  +E  + +T LP+PSN  ++S+S
Sbjct: 27  RSRSRSERASSLALPLNSLLDFYDKQQEQCKSVTLLPLPSNSGSISES 74


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,279,539
Number of Sequences: 53049
Number of extensions: 430204
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)