Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_M02
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi dom...    28   5.7  
U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AC006708-23|AAF60414.1|  975|Caenorhabditis elegans Paz/piwi
           domain-containing protein2 protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 460 TLPVPSNRNTLSQSCTERHAQLFLPP 537
           TLPV S   T   +C +R  QL +PP
Sbjct: 41  TLPVTSEHKTAHDACIKRLEQLEIPP 66


>U53146-1|AAA96111.1|  348|Caenorhabditis elegans Hypothetical
           protein ZC411.1 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 379 RRMSPRIVPWNRCLXHNYTREIVRLMTTL--PVPSNRNTL 492
           RR++ R  P NRC+  +   ++ +L   L  P+P+ +  L
Sbjct: 188 RRLTFRFTPTNRCIWESPLHDVTKLRRALNTPLPTGQQAL 227


>AC024696-1|AAK84516.1|  348|Caenorhabditis elegans Hypothetical
           protein F07B7.7 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +1

Query: 379 RRMSPRIVPWNRCLXHNYTREIVRLMTTL--PVPSNRNTL 492
           RR++ R  P NRC+  +   ++ +L   L  P+P+ +  L
Sbjct: 188 RRLTFRFTPTNRCIWESPLHDVTKLRRALNTPLPTGQQAL 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,446,483
Number of Sequences: 27780
Number of extensions: 225297
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)