Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L23
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 0.77
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 1.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.8
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 1.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.4
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo... 25 7.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.2
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -1
Query: 589 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 443
+L + G P+G+ +S++ +L TDF +++ + + S LS T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 159 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 248
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.8
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +1
Query: 250 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 426
S NS T AT +S L+ + + +A S P S V T S T +T+ ++S
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481
Query: 427 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 552
SAS P S+ S T+ STP T N + +T S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +3
Query: 357 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 512
+++S P+ DEG D + + RF + + I ++ V + + + H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364
Query: 513 DTKSVYREYNREFLLPKGTNP 575
KSV RE NR + L K NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +3
Query: 429 VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLPKGTNPEAIKSSL 596
V TP + V DNK LV K EK + +S E +E K T PE + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402
>SPBC16E9.15 |||heat shock factor binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 75
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 159 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 281
GDF + +FS E + ++EE M E MN++S+
Sbjct: 31 GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 363 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 479
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 550 NSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 440
+S++ S T +S SS +S+ S+ +TTISSG+
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 140 KYPHQAWRFFGYRY 181
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,918
Number of Sequences: 5004
Number of extensions: 49667
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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