Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L22
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 163 3e-41
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 157 1e-39
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 150 2e-37
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.59
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c... 27 2.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.1
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 7.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 25 9.5
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 163 bits (395), Expect = 3e-41
Identities = 79/149 (53%), Positives = 101/149 (67%)
Frame = +3
Query: 138 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 317
SK+ PES+LK + +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 318 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 497
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 498 ATVNMLRIAEPYIAWGYPNLKSVRELVYK 584
AT ML++ EPY+ +G PNLK+VREL+YK
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYK 158
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 583 KRGFAKLSGQRIPITSNSIVXKRL 654
KRGF K++ QRI ++ N+I+ L
Sbjct: 158 KRGFGKVNKQRIALSDNAIIEAAL 181
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 157 bits (382), Expect = 1e-39
Identities = 74/142 (52%), Positives = 97/142 (68%)
Frame = +3
Query: 159 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 338
PES+LK + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 339 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 518
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 519 IAEPYIAWGYPNLKSVRELVYK 584
+ EPY+ +G PN K+VREL+YK
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYK 157
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 583 KRGFAKLSGQRIPITSNSIVXKRL 654
KRGF K++ QRIP++ N+I+ L
Sbjct: 157 KRGFGKVNKQRIPLSDNAIIEAAL 180
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 150 bits (363), Expect = 2e-37
Identities = 70/142 (49%), Positives = 95/142 (66%)
Frame = +3
Query: 159 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 338
PE +LK ++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 339 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 518
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 519 IAEPYIAWGYPNLKSVRELVYK 584
I EPY+ +G PNL SVREL+YK
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYK 156
Score = 31.1 bits (67), Expect = 0.15
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 583 KRGFAKLSGQRIPITSNSIVXKRL 654
KRGF K++GQRI ++ N+++ + L
Sbjct: 156 KRGFGKINGQRIALSDNALIEEAL 179
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 240 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 356
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
catalytic subunit|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1018
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 513 LRIAEPYIAWGYPNLKSVRELVYKTWIRQAEWTTYTNHFQQHC 641
L AEP+++ K + KTW RQ WT Y C
Sbjct: 117 LEFAEPHLSKAIKFSKIDTPVQPKTWKRQPGWTKYAKDGSISC 159
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 339 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 458
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 273 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 374
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 121 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 294
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +3
Query: 135 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRS--SAIKKKREIFKRAEQYVKEYRIK 308
D ++PA+PE +K Q KR + S ++ K + ++ V+EY
Sbjct: 441 DENRIPALPE--VKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEAKSND-VEEYDAF 497
Query: 309 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFR 455
+DEI + N N E + + + + Q+S + K LF+
Sbjct: 498 YKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQLKFASLFK 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,329
Number of Sequences: 5004
Number of extensions: 47744
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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