Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L22
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 167 5e-42
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 162 2e-40
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 95 4e-20
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 1.9
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.6
06_01_0865 - 6571056-6571190,6571737-6571977,6572279-6572401,657... 28 5.6
02_05_0743 + 31425827-31425888,31426733-31426759,31426840-314269... 28 7.5
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.9
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 167 bits (407), Expect = 5e-42
Identities = 79/147 (53%), Positives = 105/147 (71%)
Frame = +3
Query: 144 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 323
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 324 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 503
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 504 VNMLRIAEPYIAWGYPNLKSVRELVYK 584
+NMLR EPY+A+GYPNLKSVREL+YK
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYK 153
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 583 KRGFAKLSGQRIPITSNSIVXKRL 654
KRG+ KL+ QRIP+ +N ++ + L
Sbjct: 153 KRGYGKLNKQRIPLQNNKVIEEGL 176
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 162 bits (394), Expect = 2e-40
Identities = 75/143 (52%), Positives = 103/143 (72%)
Frame = +3
Query: 156 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 335
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 336 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 515
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 516 RIAEPYIAWGYPNLKSVRELVYK 584
R EPY+A+GYPNLKSVREL+YK
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYK 152
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 583 KRGFAKLSGQRIPITSNSIV 642
KRG+ KL+ QRIP+T+N ++
Sbjct: 152 KRGYGKLNKQRIPLTNNKVI 171
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 95.1 bits (226), Expect = 4e-20
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Frame = +3
Query: 129 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 308
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 309 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 479
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 480 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYK 584
F++ AT+ L + EP+I +G+PNLK+V++L+YK
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYK 155
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 222 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 362
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 367 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 465
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>06_01_0865 -
6571056-6571190,6571737-6571977,6572279-6572401,
6572501-6572527,6573954-6574009
Length = 193
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 465 INNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKTWIRQAEWTTY 617
+ +G F++L ++L A P ++ YP SVR + K+ + +W TY
Sbjct: 1 MGSGSFLKLLANNFDVL--AGPLVSLAYPLYASVRAIETKSPVDDQQWLTY 49
>02_05_0743 +
31425827-31425888,31426733-31426759,31426840-31426962,
31427252-31427492,31427655-31427780
Length = 192
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 507 NMLRIAEPYIAWGYPNLKSVRELVYKTWIRQAEWTTY 617
N+ +A P ++ YP SVR + K+ + +W TY
Sbjct: 15 NLDVLAGPIVSLAYPLYASVRAIETKSAVDDQQWLTY 51
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 346 IVATTTFPGKPNWHLSSESVVSTKFH 423
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,052,421
Number of Sequences: 37544
Number of extensions: 307910
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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