Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L20
(597 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin pr... 106 2e-25
AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin pr... 106 2e-25
AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin pr... 98 6e-23
AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin pr... 95 3e-22
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 24 0.85
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 23 2.6
>AF506023-1|AAM46899.1| 76|Tribolium castaneum polyubiquitin
protein.
Length = 76
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>AF506022-1|AAM46898.1| 685|Tribolium castaneum polyubiquitin
protein.
Length = 685
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 91 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 167 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 220
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 243 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 296
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 319 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 471 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 524
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 547 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600
Score = 106 bits (254), Expect = 2e-25
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 623 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 676
Score = 103 bits (248), Expect = 9e-25
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VEPSDTI NVKAKIQDKEGIPP+QQR IFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 395 LEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKESTLH 448
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 81 VKTLTGKTITL 91
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 157 VKTLTGKTITL 167
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 233 VKTLTGKTITL 243
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 309 VKTLTGKTITL 319
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 385 VKTLTGKTITL 395
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 461 VKTLTGKTITL 471
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 537 VKTLTGKTITL 547
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 613 VKTLTGKTITL 623
>AF506021-1|AAM46897.1| 64|Tribolium castaneum polyubiquitin
protein.
Length = 64
Score = 97.9 bits (233), Expect = 6e-23
Identities = 46/50 (92%), Positives = 48/50 (96%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 238
L+VEPSDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKE
Sbjct: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>AF506020-1|AAM46896.1| 112|Tribolium castaneum polyubiquitin
protein.
Length = 112
Score = 95.5 bits (227), Expect = 3e-22
Identities = 45/50 (90%), Positives = 47/50 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 238
L+VEPSDTI NVKAKIQDKEGIPP+QQR IFAGKQLE GRTLSDYNIQKE
Sbjct: 63 LEVEPSDTIENVKAKIQDKEGIPPDQQRSIFAGKQLEDGRTLSDYNIQKE 112
Score = 82.6 bits (195), Expect = 2e-18
Identities = 38/40 (95%), Positives = 39/40 (97%)
Frame = +2
Query: 131 KIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 1 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 40
Score = 25.0 bits (52), Expect = 0.48
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 53 VKTLTGKTITL 63
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 523 GTYLXVVVFEDHRAVTLPAVVTVLHHR 443
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 523 GTYLXVVVFEDHRAVTLPAVVTVLHHR 443
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 523 GTYLXVVVFEDHRAVTLPAVVTVLHHR 443
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 523 GTYLXVVVFEDHRAVTLPAVVTVLHHR 443
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 24.2 bits (50), Expect = 0.85
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 523 GTYLXVVVFEDHRAVTLPAVVTVLHHR 443
GTY ++F +V L VV HHR
Sbjct: 275 GTYFNCIMFMVASSVVLTVVVLNYHHR 301
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 22.6 bits (46), Expect = 2.6
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -2
Query: 272 HHEASTPGGGWIPSGYCSPR 213
HH P GG P G PR
Sbjct: 63 HHYGGPPSGGQPPQGMPYPR 82
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,209
Number of Sequences: 336
Number of extensions: 2307
Number of successful extensions: 31
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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