Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L20
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 157 9e-40
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 157 9e-40
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 101 6e-23
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 101 6e-23
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 101 6e-23
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 62 5e-11
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 36 0.006
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 36 0.006
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 33 0.042
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 29 0.68
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 2.1
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 4.8
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 25 6.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 6.3
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 6.3
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 25 8.4
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 157 bits (382), Expect = 9e-40
Identities = 78/134 (58%), Positives = 90/134 (67%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLHXXXXXX 268
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 269 XXXXXXXXXNYSTPXXXXXXXXXXXLXVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAV 448
Y+TP L VL++YKV+ +G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 449 MEDRHYCGKCHSTM 490
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 157 bits (382), Expect = 9e-40
Identities = 78/134 (58%), Positives = 90/134 (67%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLHXXXXXX 268
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
Query: 269 XXXXXXXXXNYSTPXXXXXXXXXXXLXVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAV 448
Y+TP L VL++YKV+ +G + RLRREC CGA FMA
Sbjct: 75 GGGKKRKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMAN 132
Query: 449 MEDRHYCGKCHSTM 490
+DR YCG+CH T+
Sbjct: 133 HKDRLYCGRCHLTL 146
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 91 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 167 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 220
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 243 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 296
Score = 101 bits (243), Expect = 6e-23
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVK+KIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 319 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 5 VKTLTGKTITL 15
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 81 VKTLTGKTITL 91
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 157 VKTLTGKTITL 167
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 233 VKTLTGKTITL 243
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/11 (100%), Positives = 11/11 (100%)
Frame = +1
Query: 58 VKTLTGKTITL 90
VKTLTGKTITL
Sbjct: 309 VKTLTGKTITL 319
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 62.5 bits (145), Expect = 5e-11
Identities = 23/54 (42%), Positives = 39/54 (72%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L ++P+D + +K ++++KEGIPP+QQRLI+AGKQ+ + Y+++ S LH
Sbjct: 15 LDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLH 68
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
L++EP++T +K ++ +PP +Q++I G QL+ L I+ +TL
Sbjct: 15 LEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 35.5 bits (78), Expect = 0.006
Identities = 16/46 (34%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +2
Query: 104 SDT-IXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKE 238
+DT I +K KIQ ++ +Q+LI++G+ L +T+ +YNI+++
Sbjct: 20 ADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 32.7 bits (71), Expect = 0.042
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 95 VEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
V+ ++ +K I I +QRLI+AG+ L+ +L Y IQ ++H
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIH 71
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 236 PSGYCSPRGYVHXPAAFQRRSTSVDWEGF 150
PS + PRG V+ P+ +RR + + GF
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGF 45
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 568 NPSYTAVASVPYRXEGTYLXVVVFEDHRAVTLPAV 464
NP+YT Y TYL F++HR + AV
Sbjct: 144 NPAYTNSHQNSYSLNETYLSYDFFDNHRGASSSAV 178
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 158 PNQQRLIFAGKQLEXGRTLSDYNI 229
PNQ AGK+L+ R L DY+I
Sbjct: 476 PNQGDTRKAGKRLKYSRNLDDYHI 499
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 350 VLRFY-KVDXNGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 508
V+R Y ++ N + R C E F V++D H KC + ++ D
Sbjct: 224 VIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 481 VTLPAVVTVLHHRHEHSGAALLAC 410
VTL A+ T+L + H H L+AC
Sbjct: 402 VTLKAIETLLENTHSHVLPILVAC 425
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 74 PVRVFTENLHLHSPYAVTIPAR 9
P+ +F N+HL +P+A +P++
Sbjct: 3957 PLWLFINNIHLSTPWAEKLPSK 3978
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/27 (29%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -2
Query: 215 RGYVHXPAA-FQRRSTSVDWEGFPLCL 138
RG + P++ ++++ ++DW+ PLC+
Sbjct: 67 RGKIGSPSSSIRKQNDTIDWKNSPLCV 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,846
Number of Sequences: 5004
Number of extensions: 36488
Number of successful extensions: 105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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