Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L20
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 114 4e-26
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 114 4e-26
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 103 1e-22
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 103 1e-22
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 103 1e-22
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 103 1e-22
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 103 1e-22
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 60 1e-09
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 46 2e-05
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 44 1e-04
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 39 0.003
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 36 0.029
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 35 0.038
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 34 0.067
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 33 0.12
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical ... 29 2.5
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 28 5.8
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 28 5.8
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 114 bits (275), Expect = 4e-26
Identities = 56/135 (41%), Positives = 77/135 (57%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLHXXXXXX 268
L+V ++ + ++K KI+ EGIP +QRL +AG+QLE SD I E+T++
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELL 68
Query: 269 XXXXXXXXXNYSTPXXXXXXXXXXXLXVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAV 448
Y+TP L VL++YK+D NGKI RLR+EC CG GVFMA
Sbjct: 69 GGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQ 128
Query: 449 MEDRHYCGKCHSTMV 493
+RHYCG+CH T+V
Sbjct: 129 HANRHYCGRCHDTLV 143
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 114 bits (275), Expect = 4e-26
Identities = 56/135 (41%), Positives = 77/135 (57%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLHXXXXXX 268
L+V ++ + ++K KI+ EGIP +QRL +AG+QLE SD I E+T++
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSEATIYVNLELL 68
Query: 269 XXXXXXXXXNYSTPXXXXXXXXXXXLXVLRFYKVDXNGKIHRLRRECTGEQCGAGVFMAV 448
Y+TP L VL++YK+D NGKI RLR+EC CG GVFMA
Sbjct: 69 GGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQ 128
Query: 449 MEDRHYCGKCHSTMV 493
+RHYCG+CH T+V
Sbjct: 129 HANRHYCGRCHDTLV 143
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 91 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 167 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 220
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 243 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 296
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 319 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 395 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAG 187
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAG
Sbjct: 471 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 91 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 167 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 220
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 243 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 296
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 319 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 395 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 471 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 524
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 547 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 623 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 676
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 699 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 752
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 775 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 828
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 91 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 144
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 167 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 220
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 243 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 296
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 319 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 372
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 395 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 448
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 471 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 524
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 547 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 600
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 623 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 676
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 699 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 752
Score = 101 bits (243), Expect = 3e-22
Identities = 48/54 (88%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQK+STLH
Sbjct: 775 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKQSTLH 828
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 103 bits (246), Expect = 1e-22
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L+VE SDTI NVKAKIQDKEGIPP+QQRLIFAGKQLE GRTLSDYNIQKESTLH
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 68.5 bits (160), Expect = 3e-12
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
L +EP+D + +K K+++KEGIPP QQRLIFAGKQ+ +T +DY + S LH
Sbjct: 15 LDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYKVLGGSVLH 68
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
+ ++ +DT+ +K K+Q+K G+PP+QQRLIF QLE R L YNI+ E +H
Sbjct: 175 ISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAYNIRDEDIIH 228
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
+ VE SD I ++ K+ + + P ++ Q RT+SDYNI+ STL
Sbjct: 103 ITVEASDAIKDLNFKVAEAQRKPHQPSNIVLCKDQ----RTISDYNIKNGSTL 151
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +2
Query: 92 QVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
++ DT+ ++K I+ + IP + L F+GK+LE ++ DYNIQK ST+
Sbjct: 168 KIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDYNIQKSSTI 219
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/23 (86%), Positives = 21/23 (91%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIP 157
L+VE SDTI NVKAKIQDKEGIP
Sbjct: 15 LEVEASDTIENVKAKIQDKEGIP 37
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
L V SDTI VK I + + R++ K LE TL+ YNIQ+ STL
Sbjct: 187 LWVRGSDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTL 239
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 35.5 bits (78), Expect = 0.029
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
L+V SDTI +K +I GI R K LE TL+ YNI++ ST+
Sbjct: 176 LRVCGSDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 35.1 bits (77), Expect = 0.038
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQK 235
L+V SDTI ++K +I + + R++ GK LE +L+ YNIQ+
Sbjct: 210 LRVCGSDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQE 258
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 34.3 bits (75), Expect = 0.067
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLE---XGRTLSDYNIQKESTL 247
L SDT+ +VKAKI +K I PN Q+L+ L+ TL D + + STL
Sbjct: 116 LDTSASDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLFDNSFENGSTL 171
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGK 190
L+V ++ + ++K KI+ EGIP +QRL +A +
Sbjct: 13 LEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/54 (22%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQL-EXGRTLSDYNIQKESTL 247
++++ +T+ +K +I+ + + N+Q L+F G +L + +T++D I ++ +
Sbjct: 36 VEMKDKETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKI 89
>AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical
protein F54D10.7 protein.
Length = 264
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +2
Query: 89 LQVEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTL 247
++++ DTI V + G+ ++QRL+ K+L+ +TL + I+ S +
Sbjct: 196 MELDSLDTIYTVGMALLKHGGLALHRQRLMLNDKELQYNQTLEEAGIKDGSVI 248
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/52 (21%), Positives = 30/52 (57%)
Frame = +2
Query: 95 VEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
++ + + +K +IQD+ G+P +Q+L+ G ++ + + YN+ + ++
Sbjct: 593 IQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIY 644
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/52 (21%), Positives = 30/52 (57%)
Frame = +2
Query: 95 VEPSDTIXNVKAKIQDKEGIPPNQQRLIFAGKQLEXGRTLSDYNIQKESTLH 250
++ + + +K +IQD+ G+P +Q+L+ G ++ + + YN+ + ++
Sbjct: 593 IQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAIY 644
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,199,095
Number of Sequences: 27780
Number of extensions: 223153
Number of successful extensions: 622
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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