Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L18
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   130   2e-31
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    28   0.90 
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   3.6  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    25   6.3  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   6.3  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   8.4  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  130 bits (313), Expect = 2e-31
 Identities = 57/98 (58%), Positives = 75/98 (76%)
 Frame = +1

Query: 13  MQFQXKAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 192
           M+ Q K   SFE+RK E  +IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 193 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEH 98


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 25/113 (22%), Positives = 49/113 (43%)
 Frame = +1

Query: 235 ALFFFVNNVIPPTSATMGSLYQEHHA*RFLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHM 414
           A+F     V P  S       Q +H  RF SI S+      + +  NY L N F+ +   
Sbjct: 33  AVFLLCAIVFPLVSIFSLPQKQTYH--RFFSILSLVSCLAYFTMACNYGLKNVFSSASFF 90

Query: 415 VKFNLSLXLKLCIILWYFXIINWHIILYLSSYE*YKTFQASKGLLCFHIFVLV 573
            + ++ +   +  I W   +IN+ +I+ +  +    +      ++C+ +F +V
Sbjct: 91  REVSVRMVYYVRYIQW---LINFPLIIVMLHWTVGVSILEIAYVVCYVLFAIV 140


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 579 TLNQNKDVKTKQSFTCLKSFILFI 508
           TL    + KT +SFT LK FIL I
Sbjct: 546 TLTAKSEAKTIRSFTKLKLFILLI 569


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 533 QVKDCFVFTSLFWLSVITAVI 595
           +V    VFTSLFW + IT+ I
Sbjct: 199 KVSAFLVFTSLFWFTGITSTI 219


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 597 FITAVMTLNQNKDVKTKQSFTCLKSFI 517
           ++ A+   + N     KQSFT LKSF+
Sbjct: 238 YMNAINNFSSNVQEGAKQSFTQLKSFL 264


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 394 NYLKVNNLELISIDIF-VGKC 335
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,865
Number of Sequences: 5004
Number of extensions: 46903
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)