Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_L18
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 125 2e-29
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 122 2e-28
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 71 5e-13
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 43 2e-04
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 43 2e-04
07_03_0039 - 12718972-12720699 29 2.1
09_02_0475 + 9724676-9724936,9725518-9726216,9726273-9726596,972... 28 6.5
12_02_0537 + 20126176-20127154,20127398-20127624 27 8.6
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 27 8.6
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 125 bits (302), Expect = 2e-29
Identities = 54/93 (58%), Positives = 74/93 (79%)
Frame = +1
Query: 28 KAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIR 207
K H+ E+R+AE +IR KY DR+PVIVEKA ++ + D+DKKKYLVP+DLTVGQF +++R
Sbjct: 7 KLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVR 66
Query: 208 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
KRI L PE A+F FV N +PPT+A M ++Y+E+
Sbjct: 67 KRIKLSPEKAIFIFVKNTLPPTAALMSAIYEEN 99
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 122 bits (294), Expect = 2e-28
Identities = 53/93 (56%), Positives = 72/93 (77%)
Frame = +1
Query: 28 KAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIR 207
K H E+R+AE +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++R
Sbjct: 171 KLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVR 230
Query: 208 KRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
KRI L PE A+F FV N +PPT++ M ++Y+E+
Sbjct: 231 KRIKLSPEKAIFVFVKNTLPPTASLMSAIYEEN 263
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +1
Query: 154 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
+YLVP+DLTVGQF +++RKRI L E A+F FV N +PPT+A M ++Y+E+
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEEN 1934
Score = 54.8 bits (126), Expect = 5e-08
Identities = 23/37 (62%), Positives = 31/37 (83%)
Frame = +1
Query: 46 EQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKK 156
E+R+AE +IR KYPDR+PVIVEKA ++ + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 205 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
++++HL P ALF FVNN +P T+ MGS+Y+ +
Sbjct: 221 KRKLHLSPGTALFVFVNNTLPQTAQLMGSVYESY 254
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 205 RKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEH 306
++++HL P ALF FVNN +P T+ MGS+Y+ +
Sbjct: 35 KRKLHLPPGTALFVFVNNTLPQTAQLMGSVYESY 68
>07_03_0039 - 12718972-12720699
Length = 575
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 163 VPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNV-IPPTS 276
VPS L F L+R+ + P + L FF+ ++ +PPT+
Sbjct: 80 VPSSLRTSAFPSLLRRHLAFHPLNELPFFLESIGLPPTT 118
>09_02_0475 +
9724676-9724936,9725518-9726216,9726273-9726596,
9726900-9727847
Length = 743
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 355 LWKLIPNYSLSNSFTLSDHMVKFNLSLXLKLCII 456
LW+L+ +SL S + +++SL LK C +
Sbjct: 335 LWELVERHSLEREVFSSFKQIYYDMSLMLKSCFL 368
>12_02_0537 + 20126176-20127154,20127398-20127624
Length = 401
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -1
Query: 385 KVNNLELISIDIFVGKCYV*KEIFMHGVLGRETPLLQMWVE*HCSRRRKVRLQAAGEYVS 206
++ +E I + +GKC +++ +H VLG T + + +CS R + LQ +
Sbjct: 246 RIVTMEEIGLRSLLGKCKSLEKLCLHFVLGL-TDSDMITLAQNCSNLRSISLQLEPVFCE 304
Query: 205 GSRSR 191
G R
Sbjct: 305 GPEGR 309
>05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 334 SIFRRKCLWKLIPNYSLSNSFTLSDHMVKFN 426
SI+ ++ KLI N+SL+ + + DH + FN
Sbjct: 933 SIYHQQIRPKLISNFSLAWNLYVKDHPIDFN 963
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,212,744
Number of Sequences: 37544
Number of extensions: 270986
Number of successful extensions: 657
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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