Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L18
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap a...   171   4e-43
AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A recept...   171   4e-43
Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical pr...    63   2e-10
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U23511-11|AAC46797.1|  123|Caenorhabditis elegans Lc3, gabarap and
           gate-16 familyprotein 1 protein.
          Length = 123

 Score =  171 bits (415), Expect = 4e-43
 Identities = 78/99 (78%), Positives = 88/99 (88%)
 Frame = +1

Query: 13  MQFQXKAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 192
           M++  K  ++FE+R+AEG KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 193 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH 309
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH 99



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 314 EDFFLYIAFSDENVYG 361
           ED FLYIA+SDE+VYG
Sbjct: 101 EDLFLYIAYSDESVYG 116


>AF326943-1|AAG49393.1|  123|Caenorhabditis elegans GABA A
           receptor-associated protein protein.
          Length = 123

 Score =  171 bits (415), Expect = 4e-43
 Identities = 78/99 (78%), Positives = 88/99 (88%)
 Frame = +1

Query: 13  MQFQXKAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 192
           M++  K  ++FE+R+AEG KIRRKYPDR+PVIVEKAPK++L DLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60

Query: 193 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHH 309
           YFLIRKRI LRPEDALFFFVNNVIP T  TMG LYQ+HH
Sbjct: 61  YFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHH 99



 Score = 33.1 bits (72), Expect = 0.15
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +2

Query: 314 EDFFLYIAFSDENVYG 361
           ED FLYIA+SDE+VYG
Sbjct: 101 EDLFLYIAYSDESVYG 116


>Z69385-5|CAA93421.1|  130|Caenorhabditis elegans Hypothetical
           protein ZK593.6 protein.
          Length = 130

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
 Frame = +1

Query: 28  KAAHSFEQRKAEGXKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFLI 204
           K    F +R+ +  +IR + P++VPVI+E+    R L  +D+ K+LVP  +TV +   ++
Sbjct: 18  KERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIV 77

Query: 205 RKRIHLRPEDALFFFVN-NVIPPTSATMGSLYQE 303
           R+R+ L P+ A F  VN   +   S +M +LY +
Sbjct: 78  RRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQ 111


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = +1

Query: 319 FLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLXLKLCIILWYFXII---NWHI 489
           ++ +H++ R +   ++  NY +   F +   +V + ++  + L IIL+Y   I    +H+
Sbjct: 36  YIYVHNLNRHREKVEMGQNYFILFCFEVGLTVVDYFIATFILLFIILFYILHILQQTFHV 95

Query: 490 ILYLSSYE*YKTFQASKGLLCFH 558
           IL+L +      F + K +  FH
Sbjct: 96  ILFLLA-----VFNSLKYIFSFH 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,636
Number of Sequences: 27780
Number of extensions: 256412
Number of successful extensions: 839
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)