Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_L14
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   152   1e-37
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  152 bits (369), Expect = 1e-37
 Identities = 72/139 (51%), Positives = 97/139 (69%)
 Frame = +1

Query: 139 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXXREIFKRAEQYVKEYRIKERD 318
           +KK+P VPE+VLK             Q  +   +   +   + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 319 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNX 498
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LN 
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 499 ATVNMLRIAXPYIAWGYPN 555
           AT+ +LRI  PY+AWGYPN
Sbjct: 124 ATLPLLRIIEPYVAWGYPN 142


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +2

Query: 263 KSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 421
           K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 25  KMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 230 FSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSF 129
           F  TC+ L  ++ L L  L T  GT+ SF LS F
Sbjct: 238 FKQTCSALTSKSMLQLFPLFTVLGTSSSFWLSIF 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,968
Number of Sequences: 27780
Number of extensions: 191626
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)